Phascolarctos cinereus (koala): 110220175
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Entry
110220175 CDS
T05867
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03030
DNA replication
pcw03410
Base excision repair
pcw03420
Nucleotide excision repair
pcw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
110220175 (LIG1)
03410 Base excision repair
110220175 (LIG1)
03420 Nucleotide excision repair
110220175 (LIG1)
03430 Mismatch repair
110220175 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcw03032
]
110220175 (LIG1)
03400 DNA repair and recombination proteins [BR:
pcw03400
]
110220175 (LIG1)
Enzymes [BR:
pcw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
110220175 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
110220175 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
110220175 (LIG1)
DNA replication proteins [BR:
pcw03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
110220175 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
110220175 (LIG1)
DNA repair and recombination proteins [BR:
pcw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
110220175 (LIG1)
NER (nucleotide excision repair)
Other NER factors
110220175 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
110220175 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
RNA_ligase
PucR
DDR
Motif
Other DBs
NCBI-GeneID:
110220175
NCBI-ProteinID:
XP_020859767
UniProt:
A0A6P5LN62
LinkDB
All DBs
Position
Unknown
AA seq
887 aa
AA seq
DB search
MQRSIKSFFQPMSGDRVRKQEEPPKSSKEREPTSKAALKERNAVEPESESPVKRPMRKVP
RVLGSEGEEEDHEEVAPTAPPDQKPSVPSRAPSPASSGPSPSDSSPHGISPAGIPKRRTA
RKQMQKRKLKELPEDHEGQVPKRLKREGGESAQGRSPERPASIREAQRAPEPQGASEEAR
RGPEPKAPARAPKAFSSFFTPQKPAAAKQTPKEAETGKAAEETSRAPLDPATYDPSKSSY
HPLDDACWKPGQRVPYLIVARTFEKIEEVSARLRMVETLSNLLRSVTALSPTDLLPILYL
SLNQLGPPQQGLELGVGDGVLLKAVAQATGRQLEAIRAEMAERGDVGLVVEASRSTQRTM
LPLPPLTASGVLSKLRDIARLTGSASTSKKIDIIKGLFVACRHSEARFIARALSGRLRLG
LAEQSVLAALAQAVTLTPPGQEFPPAVVDAGTGKLAEARKTWLEEKGMILKQTFCEVPDL
DLIVPALLEHGLDQLPQHCQLTPGVPLKPMLAHPTRGIGEVLKRFEESAFTCEYKYDGQR
AQIHVLANGDVKIFSRNQEDNTGRYPDVISRIPKMKHPSVISCILDAEAVAWDRVKKQIQ
PFQVLSTRKRKEVEEAEIQVQVCLYAFDLIYLNGQSLVREPLSRRRQQLRENFIETEGEF
VFATSLDTKDTEQIADFLEQSVKDSCEGLMVKTLDTNATYEIAKRSHNWLKLKKDYLEGI
GDTLDLVLIGAYLGRGKRAGRYGGFLLAAFDEDSEEFQAICKLGTGFSDEELEEHYQSLQ
ALVIPAPRSYVRAEGAVPPDHWLEPTTVWEVKCADLSVSPIYSAARGLVESDKGVSLRFP
RFVQVRKDKKPEEATSSAQVANLYKKQQQIQNQQDSKSPTFEPEDFC
NT seq
2664 nt
NT seq
+upstream
nt +downstream
nt
atgcagcgatcgataaagtcgtttttccagcctatgagcggggacagagtgaggaagcag
gaggagccccccaaaagcagcaaggagagagagcccacctccaaggctgccctgaaggag
aggaatgctgtagaacctgagagtgagtcccccgtgaagaggcctatgaggaaagtgccc
cgagtcctagggagtgaaggcgaggaggaggaccacgaggaggtggccccgacagccccc
ccagaccagaagcccagcgtcccctcccgggccccttctccagccagctccggcccgtcc
ccctcagactcctcgccccacggcatctccccagcagggatcccaaagcgtcggacagct
cggaaacagatgcagaaacgtaagctgaaggagctgcctgaggaccatgagggccaggtg
cccaagaggcttaagagggagggaggcgagagtgcacaagggagaagccctgagcggccc
gcctcgatccgtgaggcacagcgggcccccgagccgcagggcgcctcggaggaggcgagg
cgaggcccggagccaaaggcacccgcccgggcacccaaggccttcagcagctttttcacc
ccccaaaagccggcagcagcaaagcagaccccaaaggaggcagagacagggaaggcagca
gaggagacatccagggcgcccctagacccagccacatacgacccttctaagagcagctat
caccccctggacgacgcatgctggaaaccagggcagagggtcccctacctcattgtagct
cggacatttgagaaaattgaggaagtctctgctcggctccggatggtggaaacgctgagc
aacctcctccggtcagtgaccgccctgtcccccacagacctgctccctatcctctacctg
agtctcaaccagctgggccccccccagcaaggcctggagctcggcgtgggggacggcgtg
ctcctcaaggcggtggcccaagccacagggcggcaactggaagccatacgggccgagatg
gcagaaaggggggacgtggggttggtggtagaggccagccgcagcacccagcgtaccatg
ctgcccctgccccccctgacggcatcaggggtcctgagcaagctccgagacatcgcccgc
ctcacaggcagcgcttccacatcaaagaagatcgacatcatcaaaggcttgtttgttgcc
tgtcgccactcggaggcccgcttcattgccagggccctgagtgggcggctgcgcctgggc
cttgccgaacagtcggtgctggccgcacttgcccaggccgtgaccctcacgccccctggc
caagagttccccccggctgtggtagatgctgggacaggcaagttggcagaagccagaaag
acttggctggaagagaagggcatgatcctgaagcagaccttctgcgaggtgcctgacctg
gacctgattgtccctgccctgctcgagcacgggctggaccagctgccccagcactgccag
ctgaccccaggggtacccctgaagcccatgctggcccaccccacccgcggcattggggag
gtgttgaagcgcttcgaggagtctgccttcacatgtgaatataagtatgatgggcagaga
gcacagatccatgtcctggcaaacggggacgtgaagatatttagccggaaccaggaggat
aacacgggccggtatccagatgtcatcagccgcatcccgaagatgaagcatccctcagtc
atctcctgcattctggacgcagaagctgtggcctgggaccgggtaaagaagcaaattcag
cccttccaggtgctcagcacacgcaaacgcaaggaggtggaggaggccgagatccaagtc
caggtgtgcctgtatgccttcgacctcatctacctcaatgggcagtccctggtccgggag
ccgctgtcccggaggcggcagcagctccgggagaacttcatcgagacagagggcgagttt
gtttttgccacgtctctagacacgaaggacactgagcagatcgccgacttcctggagcag
tccgtgaaagattcctgtgagggcctgatggtgaagacccttgacaccaacgccacctat
gagattgccaagagatcccacaactggctcaagctgaagaaggattatctggaaggcatt
ggggacactctggacctggtgttgatcggggcctatttgggccgggggaaacgggccgga
cgatacgggggctttctcctggctgccttcgatgaggacagtgaagagttccaggctatt
tgcaagctgggcacaggcttcagtgatgaagaattagaggaacattaccagagcctccag
gccctcgtgatccctgctcctcgttcctatgtccgagccgaaggggctgtaccccctgac
cactggctagaaccaaccactgtatgggaggttaaatgtgctgatctctctgtctcccca
atttattcggcagcccgagggttggtggagagcgacaagggcgtctccctgcggtttccc
cgatttgtccaagttcgaaaagacaagaaaccagaagaggcaacctccagtgcccaggtg
gccaatttgtataagaaacagcaacagattcagaaccagcaggattccaaatcccctacc
tttgaaccggaagatttctgttaa
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integrated database retrieval system
