Phascolarctos cinereus (koala): 110223386
Help
Entry
110223386 CDS
T05867
Symbol
UPF1
Name
(RefSeq) LOW QUALITY PROTEIN: regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pcw
Phascolarctos cinereus (koala)
Pathway
pcw03013
Nucleocytoplasmic transport
pcw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
110223386 (UPF1)
03015 mRNA surveillance pathway
110223386 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcw03019
]
110223386 (UPF1)
Enzymes [BR:
pcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
110223386 (UPF1)
5.6.2.5 RNA 5'-3' helicase
110223386 (UPF1)
Messenger RNA biogenesis [BR:
pcw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
110223386 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
110223386 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
110223386
NCBI-ProteinID:
XP_020864535
UniProt:
A0A6P5M1K3
LinkDB
All DBs
Position
Unknown
AA seq
1118 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGGGAGG
PGAAGVGGAAGQLDAQVNGPDGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPV
HACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETV
LECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLS
WLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAY
QYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGD
EICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSF
DRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVK
TVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLK
VVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKR
TAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILV
GDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGS
LQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKL
LKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILS
CVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVE
GPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYF
QTHDQIGMISTGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGR
QKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELSQD
SYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacgggcccagctcgcagactctcaccttcctggacactgaggag
gccgagctgctgggcgcagacacccagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagacgccccccggggggcctggcggcggcggaggcggcgcgggcggg
cccggagccgcgggcgtcgggggagccgcgggccagctcgacgcgcaggttaatggacct
gatggtatcctgcagaacggtgctgtggatgacagcgtagctaaaactagccaactgttg
gccgaattgaattttgaagaagatgaagaagatacttactatacaaaggatctccctgtg
catgcttgcagttactgtggcatccatgacccggcttgtgtggtttactgcaatactagc
aagaaatggttttgtaacggacgtggaaacacttctggcagccacattgtaaatcaccta
gtaagagcaaaatgcaaagaggtcaccctccacaaggatgggcccctgggagagacagtg
ctggagtgttacaattgtggctgtcgaaatgtgtttctcctgggcttcatacccgccaaa
gctgattccgtggtggtgctcctctgcaggcaaccctgtgccagtcagagcagcttaaag
gatatcaattgggacagctcccagtggcagcctctgatccaagatcgctgctttctttcc
tggctggtaaagattccttctgagcaggagcagctgagagcacggcagattacagctcaa
cagatcaacaaactcgaggaactttggaaggaaaatccctcagcaactcttgaagatctg
gaaaagccaggtgttgatgaggaaccacagcatgtcttgcttcgctatgaggatgcttac
cagtatcaaaatatattcggcccacttgtcaaactggaagcagattatgataagaaactt
aaagagtcccagacccaagataacatcacagtcagatgggacctgggcctcaacaagaag
agaatcgcttacttcacgttgcccaagactgactctgatatgcgtcttatgcagggagat
gaaatctgccttcgttataaaggggacctcgccccgctgtggaagggaatcggccatgtt
attaaagtcccagataattatggagatgaaattgcgattgaattgcggagtagtgtcgga
gcccctgtagaagttactcataacttccaagtggattttgtatggaagtccacttcattt
gacagaatgcagagtgcattaaaaacatttgctgtggatgaaacctcagtatctggctac
atttaccacaaactgttgggtcatgaagtggaggatgtgattattaaatgccagctgcca
aaacgttttacagcacaaggactccctgacctcaatcattctcaggtatatgcagtaaag
actgttttgcagcgacctttgagccttatccagggaccacctggtacagggaagactgta
acatcagctacaattgtctaccatttggctaggcaaggcaatgggcctgtgctagtttgt
gcaccaagcaacatagctgtggatcagttgactgagaagattcatcagactggactgaaa
gttgttcgtctttgcgctaaaagccgggaagcaattgattctcccgtatcttttttggca
ctgcacaaccagatcaggaatatggatagtatgcctgaactccagaaattacagcaactg
aaagatgaaacaggcgaactttcatccgctgatgaaaagcgttacagagcattgaaacgc
acagctgagcgagaattgctcatgaatgcagatgtgatctgctgcacatgcgtgggagca
ggtgatccgaggctcgccaagatgcaattccgatccattttaattgacgaaagcacacag
gctactgaaccagagtgtatggtgccagttgttcttggagccaaacagttgatccttgta
ggagatcattgccagctgggtcctgtagtcatgtgcaagaaagctgcaaaagcaggcttg
tctcagtcgttgtttgagcggctagtggtgttggggatccgtccaatccgcctgcaagtc
cagtatcgaatgcatcctgcccttagtgctttcccatcaaacatcttttatgagggttcc
cttcagaatggtgtcactgcagctgatcgtgtgaaaaagggatttgatttccagtggccc
cagccagataaaccaatgttcttttatgtgacccagggccaagaagaaattgccagttca
ggcacctcttatttgaacagaacggaagcagcaaatgtggaaaagataactacaaagctc
ctgaaagctggtgccaagccagatcagattggtattattacaccttatgagggtcaacga
tcttatctggtgcaatacatgcaatttagtggctccctgcatacaaaactctaccaggaa
gtggaaatagctagtgttgatgcattccagggaagagaaaaggacttcatcatcctttcc
tgtgtgagagccaatgagcaccaaggaattggatttttaaatgaccccaggcgtctgaat
gtggctcttacccgagcaaggtatggagtaattattgtcggcaaccccaaagctctctcc
aagcaaccactttggaaccatctattgaactactacaaggaacagaaagtactggtagaa
ggacccctaaacaaccttcgggagagccttatgcaattcagcaagccccgaaaacttgtc
aataccatcaacccaggagcccggttcatgactactgccatgtatgacgcacgtgaagct
attatcccaggatctgtctatgatcggagcagtcaaggacgtccatcaaacatgtatttt
caaactcatgatcagattgggatgattagcactggacctagtcatgtcactgctatgaac
attcctattcctttcaacctcgtgatgccaccaatgccaccaccaggctatttcggccaa
gccaatggaccagctgcaggccgtggaacaccaaaggggaagactggtcgtgggggacgc
caaaaaaatcgctttggcattcctggaactagccagtcaaatcttccaaatagtcaggcc
agtcaagatgtggtatctcagcccttctcccagggtccattgactcagggctatatttcc
atgagtcagccatcacagatgagccagccagggctctcccaaccagaattatcccaggac
agttaccttggtgatgagtttaaatcgcagattgatgtggctctgtcacaagactctaca
taccaaggagaacgggcataccaacacggtggagtgacagggctgtcacagtattag
DBGET
integrated database retrieval system
