KEGG   Phascolarctos cinereus (koala): 110223759
Entry
110223759         CDS       T05867                                 
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
  KO
K20099  ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6]
Organism
pcw  Phascolarctos cinereus (koala)
Brite
KEGG Orthology (KO) [BR:pcw00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:pcw03041]
    110223759 (YTHDC2)
Enzymes [BR:pcw01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     110223759 (YTHDC2)
Spliceosome [BR:pcw03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    110223759 (YTHDC2)
SSDB
Motif
Pfam: YTH HA2_C OB_NTP_bind Helicase_C R3H DEAD Ank_2 HA2_N AAA_19 Ank nSTAND3 AAA_22 ATPase PhoH AAA_16 AAA_7 Ank_4 AAA_29 SRP54 AAA_23
Other DBs
NCBI-GeneID: 110223759
NCBI-ProteinID: XP_020865105
UniProt: A0A6P5M3A3
LinkDB
Position
Unknown
AA seq 1425 aa
MSRPSSVSPRPPAPGGGGGGGGGGGGRAKGLKDIRIDEEVKISVNIALERFRYGDQREME
FPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCSLTHNTKH
AIRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESE
FDSFRQSLPVFEKQEEIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRIFC
TQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDS
TLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPV
IYIQGRPFEVKEMFLEDILRSTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENSIKPE
SQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDVDAF
AQVFHLILTENVSVDYRHSETSATALMVAAGRGFLSQVEQLISMGANVHSKASNGWMALD
WAKHFGQTEIVDLLESYSASLEFGNLDESSLVQANGSDLSAEDRELLKAYHHSFDDEKVD
LDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNAHRYQVFMLHSNM
QTSDQKKVLKNPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNYVTMLKM
VWISKASAIQRKGRAGRCRPGICFRLFSKLRFQNMLEFQTPELLRMPLQELCLHTKLLAP
INCPVADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMV
LCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNS
ENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAA
ALQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVSVFCGPARLASNALQEPSSFRVDGV
PNDSSDSEMEDRTTANLAALKLDEWLNFKMDPEAASLLLQLRQKWHSLFLRRMRAPSKPW
SQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLSSSWRSNNSRKSSADT
EFSDDSSNAERVLMKSPSPAFHPPQKYKDRGILHPKRSSDDRSDQSSVKSTDSNSYPSPC
ASPSPPSSGKGSESPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFW
ESRMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQFAH
HLLNPWNDNKKVQISRDGQELEPQVGEQLLLLWERIPLGEKNATD
NT seq 4278 nt   +upstreamnt  +downstreamnt
atgtccaggccgagcagcgtctccccgcggcccccggccccgggcggcggcggaggcggc
ggcggcggcggcggcggccgggccaaggggctgaaggacattcgcattgacgaggaggtg
aagatctccgtcaacatcgccctggaacggtttcgttacggagaccagagggaaatggaa
tttccttcttctttaaccagtactgaaagagcttttattcatcgattaagtcagtctctt
ggtttggtctctaaaagcaaaggaaagggagcaaatagatacctaactgtgaagaagaag
gatggatcagaaacagcacatgcaatgatgacctgtagtttgactcacaatacaaaacat
gctattaggagtctaattcaaagatttccagtcacaaataaagagcgtactgaacttctg
cctaaaacagaacggggaaatgtttttgcagttgaagctgaaaaccgagaaatgagtaag
acaagtggacggctgaacaatggtatacctcagattccagtgaagaggggagaatcagaa
tttgattcttttaggcagtctttaccagtgtttgaaaaacaagaagaaattgtcaaaata
ataaaagataataaggtggttttgattgttggagaaactggatcaggaaagaccacacag
attcctcagttccttttagatgactgcttcaaaaatggaattccctgccgtatattttgt
actcagcccaggcgtttagctgctatcgctgtggctgaaagagttgcagcagaaagaaga
gaaaagattggccagacaattggctatcagatacgattagaaagcagagtttctccaaag
actcttctgacattttgcactaatggagtattacttcgcacattgatggcgggagatagc
acactatcaactgtgacacatgttatcgtggatgaagtgcatgaaagggatcgatttagt
gatttcttactgacaaagttaagagacttgttacagaagcatccaactttgaaactgatt
ctttctagtgctgcattggatgtgaatctctttataagatattttggaagttgcccagtg
atatacatacagggaagaccatttgaagtaaaagagatgtttctggaagacattttaaga
agcacaggatacacaaacaaagaaatgttaaaatacaaaaaggaaaaacaacgagaagag
aaacagcaaactactcttactgaatggtactctgctcaagagaatagcatcaaacctgaa
tctcaaaggcaaagaactgttccaaatgttactgaagaatatgatttattggatgatggt
ggtgatgctgtgtttagtcaattgactgaaaaagatgtgaattgccttgaaccatggcta
ataaaagaaatggatgcttgtctttctgacatatggctgcataaagatgtcgatgcgttt
gctcaggtgtttcatcttattttaacggaaaatgttagcgtggattacagacacagcgaa
accagtgcgacagcactaatggttgctgcaggaagaggttttttgagtcaagtagaacag
ttaattagtatgggagccaatgtccatagcaaagcatcaaatggctggatggctttagat
tgggctaaacactttggacagactgagattgtagaccttctggagtcttacagtgcttca
ttagagtttggaaatctagatgaaagttccttagtccaagcaaatggaagtgatctcagt
gcagaagacagagaattactgaaagcgtatcatcacagctttgatgatgaaaaagtggac
ttggatttgatcatgcaccttctctacaacatctgccatagctgtgatgctggagcaatc
ttaattttcctgcctggatatgatgaaattgttggactgagggatcgcattctgtttgat
gacaagcgttttgcagataatgcacataggtatcaagtctttatgcttcattcaaatatg
caaacatctgatcaaaaaaaggtactaaaaaatccaccctcgggtattcggaaaataatc
ctttctaccaatattgcagaaaccagcattacagtcaatgatgttgtctttgttattgat
tctggcaaggtaaaagagaaatcctttgatgccctgaattacgttacgatgctaaaaatg
gtgtggatttcaaaagccagtgctatccaaagaaaaggcagggcggggcgatgtaggcct
ggaatctgttttcgtctattcagcaaacttcgatttcagaatatgttggaatttcagaca
ccagaacttctgagaatgccactgcaggagctttgtttacataccaaactgttagcacct
attaactgtcccgttgctgactttcttatgaaagccccagaacctccaccagctttgatt
gttagaaatgctgttcagatgctcaagacaatagatgccatggatacctgggaagatctg
actgagcttggatatcatttagctgacttgccagtagagcctcaccttggtaaaatggtc
ttgtgtgctgtcgttttgaagtgtctggaccctatccttaccattgcctgtactctagca
tatagagatccttttgtgctacccacacaagcttctcaaaagcgtgcagccatgctgtgt
aggaaacgttttactgcaggcacctttagcgaccatatggcacttctgagagcttttcag
gcatggcagaaagcacgaagtgatggctgggaacgagctttttgtgaaaagaattttctt
tcacaagctacaatggaaatcatcataggcatgagaactcagttgcttggtcagcttaga
gcatcaggttttgttagagcacgaggtggtggtgacattcgggatgttaacacaaactct
gagaattgggctgtggttaaagctgcattggtggcaggcatgtatcctaatttagttcat
gtggacagagagaacgtagtattgacaggaccaaaggagaaaaaagtgcggtttcatcca
acttctgttcttagtcaacctcaatataaaaagattcctccagccaacggccaagcagca
gctcttcaggcactccccacagattggcttatatatgatgaaatgaccagagcacataga
atagccaatatccgatgttgttcagctgtgacacctgtcactgtttcagtattttgtgga
ccagctagattggcaagtaatgcacttcaggaaccttcatcttttagagtggatggtgtt
cctaatgacagcagtgacagtgaaatggaagacagaaccactgctaatttggctgcattg
aaactggatgaatggctaaatttcaaaatggatccagaggctgccagcttattgctacaa
ctcagacagaaatggcatagcttatttttgcgccgtatgagagctccttccaagccttgg
tctcaagttgatgaagcgactataagagcaatcatagctgttttaagcacagaagaacag
tctgcaggattgcagcaaccatcagggattggccagcgaccaagaccaatgtcttcagag
gaacttcctttgtcatcttcttggaggtcaaataatagcaggaaaagttcagcagatact
gaattctctgatgattcctctaatgccgaaagagtcttgatgaagtctccatctccagca
ttccatccacctcagaaatacaaagatagaggtattttacatcctaaacgaagctctgat
gatagatctgaccaatcttctgtgaaatctacggatagtaatagttaccctagtccttgt
gctagtccttctcctccatcctcaggaaagggctcagaatccccttcaccaagaccaaat
atgccagttcgatacttcataatgaagagtagcaatctgagaaatcttgagatttctcaa
cagaagggaatatggtcaacaacccctagcaatgaacggaaattaaatagagccttttgg
gagagcaggatggtttatttggtgttttctgttcaaggatctggacatttccagggattt
tcgaggatgtcttcagagataggacgggaaaagagtcaggactggggttcagcaggtcta
ggaggagtgttcaaggtggaatggatacggaaagaaagtcttccttttcagtttgcacac
cacttactcaatccttggaatgataataagaaagtacaaataagtagagatggacaggag
ttggagccccaggttggagaacaacttttactgttatgggaacgtattcctttaggagag
aaaaatgcaactgattga

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