Phascolarctos cinereus (koala): 110223759
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Entry
110223759 CDS
T05867
Symbol
YTHDC2
Name
(RefSeq) probable ATP-dependent RNA helicase YTHDC2
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
pcw
Phascolarctos cinereus (koala)
Brite
KEGG Orthology (KO) [BR:
pcw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pcw03041
]
110223759 (YTHDC2)
Enzymes [BR:
pcw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
110223759 (YTHDC2)
Spliceosome [BR:
pcw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
110223759 (YTHDC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
nSTAND3
AAA_22
ATPase
PhoH
AAA_16
AAA_7
Ank_4
AAA_29
SRP54
AAA_23
Motif
Other DBs
NCBI-GeneID:
110223759
NCBI-ProteinID:
XP_020865105
UniProt:
A0A6P5M3A3
LinkDB
All DBs
Position
Unknown
AA seq
1425 aa
AA seq
DB search
MSRPSSVSPRPPAPGGGGGGGGGGGGRAKGLKDIRIDEEVKISVNIALERFRYGDQREME
FPSSLTSTERAFIHRLSQSLGLVSKSKGKGANRYLTVKKKDGSETAHAMMTCSLTHNTKH
AIRSLIQRFPVTNKERTELLPKTERGNVFAVEAENREMSKTSGRLNNGIPQIPVKRGESE
FDSFRQSLPVFEKQEEIVKIIKDNKVVLIVGETGSGKTTQIPQFLLDDCFKNGIPCRIFC
TQPRRLAAIAVAERVAAERREKIGQTIGYQIRLESRVSPKTLLTFCTNGVLLRTLMAGDS
TLSTVTHVIVDEVHERDRFSDFLLTKLRDLLQKHPTLKLILSSAALDVNLFIRYFGSCPV
IYIQGRPFEVKEMFLEDILRSTGYTNKEMLKYKKEKQREEKQQTTLTEWYSAQENSIKPE
SQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVNCLEPWLIKEMDACLSDIWLHKDVDAF
AQVFHLILTENVSVDYRHSETSATALMVAAGRGFLSQVEQLISMGANVHSKASNGWMALD
WAKHFGQTEIVDLLESYSASLEFGNLDESSLVQANGSDLSAEDRELLKAYHHSFDDEKVD
LDLIMHLLYNICHSCDAGAILIFLPGYDEIVGLRDRILFDDKRFADNAHRYQVFMLHSNM
QTSDQKKVLKNPPSGIRKIILSTNIAETSITVNDVVFVIDSGKVKEKSFDALNYVTMLKM
VWISKASAIQRKGRAGRCRPGICFRLFSKLRFQNMLEFQTPELLRMPLQELCLHTKLLAP
INCPVADFLMKAPEPPPALIVRNAVQMLKTIDAMDTWEDLTELGYHLADLPVEPHLGKMV
LCAVVLKCLDPILTIACTLAYRDPFVLPTQASQKRAAMLCRKRFTAGTFSDHMALLRAFQ
AWQKARSDGWERAFCEKNFLSQATMEIIIGMRTQLLGQLRASGFVRARGGGDIRDVNTNS
ENWAVVKAALVAGMYPNLVHVDRENVVLTGPKEKKVRFHPTSVLSQPQYKKIPPANGQAA
ALQALPTDWLIYDEMTRAHRIANIRCCSAVTPVTVSVFCGPARLASNALQEPSSFRVDGV
PNDSSDSEMEDRTTANLAALKLDEWLNFKMDPEAASLLLQLRQKWHSLFLRRMRAPSKPW
SQVDEATIRAIIAVLSTEEQSAGLQQPSGIGQRPRPMSSEELPLSSSWRSNNSRKSSADT
EFSDDSSNAERVLMKSPSPAFHPPQKYKDRGILHPKRSSDDRSDQSSVKSTDSNSYPSPC
ASPSPPSSGKGSESPSPRPNMPVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFW
ESRMVYLVFSVQGSGHFQGFSRMSSEIGREKSQDWGSAGLGGVFKVEWIRKESLPFQFAH
HLLNPWNDNKKVQISRDGQELEPQVGEQLLLLWERIPLGEKNATD
NT seq
4278 nt
NT seq
+upstream
nt +downstream
nt
atgtccaggccgagcagcgtctccccgcggcccccggccccgggcggcggcggaggcggc
ggcggcggcggcggcggccgggccaaggggctgaaggacattcgcattgacgaggaggtg
aagatctccgtcaacatcgccctggaacggtttcgttacggagaccagagggaaatggaa
tttccttcttctttaaccagtactgaaagagcttttattcatcgattaagtcagtctctt
ggtttggtctctaaaagcaaaggaaagggagcaaatagatacctaactgtgaagaagaag
gatggatcagaaacagcacatgcaatgatgacctgtagtttgactcacaatacaaaacat
gctattaggagtctaattcaaagatttccagtcacaaataaagagcgtactgaacttctg
cctaaaacagaacggggaaatgtttttgcagttgaagctgaaaaccgagaaatgagtaag
acaagtggacggctgaacaatggtatacctcagattccagtgaagaggggagaatcagaa
tttgattcttttaggcagtctttaccagtgtttgaaaaacaagaagaaattgtcaaaata
ataaaagataataaggtggttttgattgttggagaaactggatcaggaaagaccacacag
attcctcagttccttttagatgactgcttcaaaaatggaattccctgccgtatattttgt
actcagcccaggcgtttagctgctatcgctgtggctgaaagagttgcagcagaaagaaga
gaaaagattggccagacaattggctatcagatacgattagaaagcagagtttctccaaag
actcttctgacattttgcactaatggagtattacttcgcacattgatggcgggagatagc
acactatcaactgtgacacatgttatcgtggatgaagtgcatgaaagggatcgatttagt
gatttcttactgacaaagttaagagacttgttacagaagcatccaactttgaaactgatt
ctttctagtgctgcattggatgtgaatctctttataagatattttggaagttgcccagtg
atatacatacagggaagaccatttgaagtaaaagagatgtttctggaagacattttaaga
agcacaggatacacaaacaaagaaatgttaaaatacaaaaaggaaaaacaacgagaagag
aaacagcaaactactcttactgaatggtactctgctcaagagaatagcatcaaacctgaa
tctcaaaggcaaagaactgttccaaatgttactgaagaatatgatttattggatgatggt
ggtgatgctgtgtttagtcaattgactgaaaaagatgtgaattgccttgaaccatggcta
ataaaagaaatggatgcttgtctttctgacatatggctgcataaagatgtcgatgcgttt
gctcaggtgtttcatcttattttaacggaaaatgttagcgtggattacagacacagcgaa
accagtgcgacagcactaatggttgctgcaggaagaggttttttgagtcaagtagaacag
ttaattagtatgggagccaatgtccatagcaaagcatcaaatggctggatggctttagat
tgggctaaacactttggacagactgagattgtagaccttctggagtcttacagtgcttca
ttagagtttggaaatctagatgaaagttccttagtccaagcaaatggaagtgatctcagt
gcagaagacagagaattactgaaagcgtatcatcacagctttgatgatgaaaaagtggac
ttggatttgatcatgcaccttctctacaacatctgccatagctgtgatgctggagcaatc
ttaattttcctgcctggatatgatgaaattgttggactgagggatcgcattctgtttgat
gacaagcgttttgcagataatgcacataggtatcaagtctttatgcttcattcaaatatg
caaacatctgatcaaaaaaaggtactaaaaaatccaccctcgggtattcggaaaataatc
ctttctaccaatattgcagaaaccagcattacagtcaatgatgttgtctttgttattgat
tctggcaaggtaaaagagaaatcctttgatgccctgaattacgttacgatgctaaaaatg
gtgtggatttcaaaagccagtgctatccaaagaaaaggcagggcggggcgatgtaggcct
ggaatctgttttcgtctattcagcaaacttcgatttcagaatatgttggaatttcagaca
ccagaacttctgagaatgccactgcaggagctttgtttacataccaaactgttagcacct
attaactgtcccgttgctgactttcttatgaaagccccagaacctccaccagctttgatt
gttagaaatgctgttcagatgctcaagacaatagatgccatggatacctgggaagatctg
actgagcttggatatcatttagctgacttgccagtagagcctcaccttggtaaaatggtc
ttgtgtgctgtcgttttgaagtgtctggaccctatccttaccattgcctgtactctagca
tatagagatccttttgtgctacccacacaagcttctcaaaagcgtgcagccatgctgtgt
aggaaacgttttactgcaggcacctttagcgaccatatggcacttctgagagcttttcag
gcatggcagaaagcacgaagtgatggctgggaacgagctttttgtgaaaagaattttctt
tcacaagctacaatggaaatcatcataggcatgagaactcagttgcttggtcagcttaga
gcatcaggttttgttagagcacgaggtggtggtgacattcgggatgttaacacaaactct
gagaattgggctgtggttaaagctgcattggtggcaggcatgtatcctaatttagttcat
gtggacagagagaacgtagtattgacaggaccaaaggagaaaaaagtgcggtttcatcca
acttctgttcttagtcaacctcaatataaaaagattcctccagccaacggccaagcagca
gctcttcaggcactccccacagattggcttatatatgatgaaatgaccagagcacataga
atagccaatatccgatgttgttcagctgtgacacctgtcactgtttcagtattttgtgga
ccagctagattggcaagtaatgcacttcaggaaccttcatcttttagagtggatggtgtt
cctaatgacagcagtgacagtgaaatggaagacagaaccactgctaatttggctgcattg
aaactggatgaatggctaaatttcaaaatggatccagaggctgccagcttattgctacaa
ctcagacagaaatggcatagcttatttttgcgccgtatgagagctccttccaagccttgg
tctcaagttgatgaagcgactataagagcaatcatagctgttttaagcacagaagaacag
tctgcaggattgcagcaaccatcagggattggccagcgaccaagaccaatgtcttcagag
gaacttcctttgtcatcttcttggaggtcaaataatagcaggaaaagttcagcagatact
gaattctctgatgattcctctaatgccgaaagagtcttgatgaagtctccatctccagca
ttccatccacctcagaaatacaaagatagaggtattttacatcctaaacgaagctctgat
gatagatctgaccaatcttctgtgaaatctacggatagtaatagttaccctagtccttgt
gctagtccttctcctccatcctcaggaaagggctcagaatccccttcaccaagaccaaat
atgccagttcgatacttcataatgaagagtagcaatctgagaaatcttgagatttctcaa
cagaagggaatatggtcaacaacccctagcaatgaacggaaattaaatagagccttttgg
gagagcaggatggtttatttggtgttttctgttcaaggatctggacatttccagggattt
tcgaggatgtcttcagagataggacgggaaaagagtcaggactggggttcagcaggtcta
ggaggagtgttcaaggtggaatggatacggaaagaaagtcttccttttcagtttgcacac
cacttactcaatccttggaatgataataagaaagtacaaataagtagagatggacaggag
ttggagccccaggttggagaacaacttttactgttatgggaacgtattcctttaggagag
aaaaatgcaactgattga
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