Paenibacillus crassostreae: LPB68_13630
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Entry
LPB68_13630 CDS
T05196
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcx
Paenibacillus crassostreae
Pathway
pcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB68_13630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcx03019
]
LPB68_13630
03009 Ribosome biogenesis [BR:
pcx03009
]
LPB68_13630
Enzymes [BR:
pcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB68_13630
Messenger RNA biogenesis [BR:
pcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB68_13630
Ribosome biogenesis [BR:
pcx03009
]
Prokaryotic type
rRNA helicases
LPB68_13630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CbiQ
AAA_22
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AOZ93149
LinkDB
All DBs
Position
2978187..2979938
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AA seq
583 aa
AA seq
DB search
MPNFHDLGVTEELDKLIRNQGITEPTPVQHEAIPLLLAGRDVIARARTGTGKTLAFLLPI
LMKIDPNRQFPQALVVAPTRELALQITEEARKLTRHTDVKILAVYGGQDVEKQLRKLEGG
RHLIIGTPGRLLDHLGRGTLDLGGVKMLVLDEADQMLHMGFLNDVETLIQALPYRRQTML
FSATMPAEIKRIAGAYTTDAEDIIIKGENSLVPLENIRQVVIECSDRNKQDALFNMINEY
NPYLALVFCRTKRRAKVLNMALQDKGYNSDELHGDLSQGKREAVMRKFREAKLHILVATD
VAARGLDVEGISHVFNYDIPQDVESYIHRIGRTGRAGDKGLAITLADPKDKPEVQRIELE
IRHNIEKLRYENHDGKIEFKKVSTFNSSSKKTKGSRDGELSSRSKSGGRGGEARGGSSRG
GEARGGSSRGGEARGGSGRVGEARGGSSRGSEARVGSSRVGEARGGSGRGGEARGGSGRG
GEARGGSSHGGEARGGSSRVGEARGGSSRGSEARGGSSRVGEARVGSGRVGEARVGSSRG
SEARGGSSRGGEARGGSAYGSSAGRSSSRGPSGGGNKGYSRKK
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
ttgcccaattttcatgacttaggtgttacagaagagttagacaagcttattcgtaatcaa
ggtatcacagaaccaactccggtacaacatgaagcaattccattattgttagcaggtcga
gatgtgattgctcgtgcgcgcacgggaacaggaaagacattagcattcttattaccaata
ttaatgaagattgatcccaatcgtcaatttccacaagcgctagtcgtagctccaacacgt
gagttggctctacagattacagaagaagcacggaagttaacaagacacacagatgtgaag
attcttgcggtctatggaggacaagatgttgagaaacaactacgtaagttagaaggtgga
agacatctcatcataggtacacctggccggttattggatcatttagggcgcggaacattg
gatcttggtggcgtaaaaatgctggtattggatgaagcagatcaaatgctccatatggga
ttcttgaacgatgttgagacattgattcaagcacttccataccgtcgccagacgatgtta
ttctctgcgacgatgccagctgagatcaaaagaatcgctggtgcgtacacaaccgatgcc
gaagatattatcattaagggtgagaattcacttgttccacttgagaatattcgtcaggtc
gttattgagtgttctgatcgaaacaagcaggatgcattgttcaatatgattaatgaatac
aacccttatctagctctagtgttctgccgaactaaacgtcgtgcgaaggttcttaatatg
gcattacaagataaaggatataactcagatgagctccacggtgatctttcacaaggaaaa
agagaagccgtaatgcgtaaattccgtgaggctaaattacacattcttgttgcaactgat
gtagcagcgcgcggattggatgttgaaggaatctcacatgtatttaactacgatattccg
caagatgtcgagagctatattcatcgaattggtcgtacaggtcgcgcaggtgataaaggt
cttgcgattacattagctgatcctaaggataagccggaagtacagcggatcgagttggaa
atccgtcataatattgaaaagctacgttatgagaatcatgatggcaagattgaatttaag
aaagtgagtacattcaattcctctagtaaaaaaactaaagggagccgcgatggtgagctg
tcttcccgcagtaagtctggtggtcgcggaggtgaagcacgcggtggaagtagccgcgga
ggcgaagcacgcggtggaagtagtcgcggaggcgaagcacgcggaggaagtggccgcgta
ggtgaagcacgcggaggaagtagccgcggaagcgaagcgcgcgtaggaagtagccgcgta
ggtgaagcacgcggaggaagtggccgcggaggcgaagcacgcggtggaagtggccgcgga
ggcgaagcacgcggaggaagtagccacggaggcgaagcacgcggaggaagtagccgcgta
ggtgaagcacgcggaggaagtagccgcggaagcgaagcgcgcggaggaagtagccgcgta
ggcgaagcacgcgtaggaagtggccgcgtaggtgaagcacgcgtaggaagtagccgcgga
agcgaagcacgcggaggaagtagccgcggaggtgaagcacgcggtggaagtgcttatggt
tcttcggcaggacgttcgtccagtagaggcccaagtggtggtggaaataaaggatattca
cgtaagaaataa
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