Paenibacillus crassostreae: LPB68_17330
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Entry
LPB68_17330 CDS
T05196
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcx
Paenibacillus crassostreae
Pathway
pcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB68_17330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcx03019
]
LPB68_17330
Enzymes [BR:
pcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB68_17330
Messenger RNA biogenesis [BR:
pcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB68_17330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOZ93778
UniProt:
A0A162KNH3
LinkDB
All DBs
Position
3763953..3765236
Genome browser
AA seq
427 aa
AA seq
DB search
MTFNELNIIPDILKALNKANYTAPTPIQEAAIPAVLEGRDFLGCAQTGTGKTAAFSVPMI
QLLSEEKSNPNARRRIRSLILTPTRELALQISDNIKTYSQFTDVSCTAIVGGVSQKVQER
ALNSGTDIIIATPGRLIDLIDQKRINLQHVKILVLDEADRMLDMGFIHDVKRILAKMPSK
KQTLFFSATMPPEISKMVKSLLVNPVKVEITPVSSTVDRIKQSVYLLATGNKQKQLNHLL
EDKSIVTALVFTRTKRGADRVVRDLTKVNISAEAIHGNKSQVDRQKALRNFKNGVTRVLV
ATDIAARGIDIEELSHVINFNLPNIPETYVHRIGRTGRAGLSGTAISFCEVDELPYLKDI
EKLIGKSVPEVKDHAYPMAKGQRLDKMDNTSKGSTAVQPKAVKSKTNPPRKPKTEWFKKE
RRSTTSR
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaatgaattgaatattattccagatatactgaaagctttgaataaagcgaat
tatacggcaccaacaccaatccaagaagcagcgatcccagcagtattagaaggtagggat
ttcctaggttgtgcacagacgggaacaggaaagacagctgccttctcagtaccgatgatc
caattattaagcgaagaaaagagtaatcccaatgcgaggcgacgtattcgttcattaatt
ctaactccaacaagagaactggctttacagatttcagataatatcaagacctatagccag
tttacagatgtgagttgtacagccattgtgggtggcgtatctcagaaagttcaggagcgg
gcgctaaatagtggtacagatattattattgctactccaggtagactcattgatcttatt
gatcaaaagcgcattaatttacagcatgttaaaattctagtgttagatgaagctgacaga
atgttggatatgggctttatacatgatgtgaagcgaattcttgccaagatgcctagcaaa
aaacagacattattcttctcggcaacaatgccaccagaaatatccaaaatggttaaatcg
ctacttgttaatccggtaaaagtggaaattacaccggtatcttcaactgtggatcgaatt
aaacagtctgtgtatttattagctacaggaaataaacaaaagcaactaaaccatctgtta
gaagataaatcgattgtgacagcattggtattcacccgtaccaaacgaggtgctgatcgc
gttgtacgtgatttgacgaaagtgaatatttcggcagaagcaatacatggtaataagtct
caggtagaccgacagaaggcattacgcaatttcaagaatggtgtgacccgagtgttagtg
gcgacagatattgcagcaagaggtattgatattgaagaactgtcacatgtgatcaacttc
aatcttccgaatattccagagacctatgtgcatcgaattggccgtactggtagggcagga
ttgagtgggacagctatttccttctgtgaagtggatgaattgccgtatctgaaggatatt
gaaaaattaatcgggaagagtgttcccgaagtgaaagatcatgcctatccaatggcgaag
ggtcaacgccttgataaaatggataatacctccaaaggatcgacagctgtacaaccgaaa
gctgtgaaatccaagacaaatccaccgcgtaagcctaagacggaatggtttaagaaagaa
agaagaagtacaacaagtagataa
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