Paenibacillus crassostreae: LPB68_17850
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Entry
LPB68_17850 CDS
T05196
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcx
Paenibacillus crassostreae
Pathway
pcx03030
DNA replication
pcx03430
Mismatch repair
pcx03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LPB68_17850
03430 Mismatch repair
LPB68_17850
03440 Homologous recombination
LPB68_17850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcx03032
]
LPB68_17850
03400 DNA repair and recombination proteins [BR:
pcx03400
]
LPB68_17850
Enzymes [BR:
pcx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LPB68_17850
DNA replication proteins [BR:
pcx03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
LPB68_17850
DNA repair and recombination proteins [BR:
pcx03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
LPB68_17850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
AOZ93862
UniProt:
A0A167G181
LinkDB
All DBs
Position
3868132..3871752
Genome browser
AA seq
1206 aa
AA seq
DB search
MTSFVHLHVHSEYSLLDGAARITDLVQQADEFGMKSLALTDHGVMYGAVPFYKACKSKGI
KPIIGCEVYFTAGSRKEKGSRKDQPTYHLILLAKNKTGYQNLMKLCSIGHLEGFHYKPRI
DEEVLRTYSEGIICLSACLGGEVPQYILQGRYDDARMAALRYKEIFGDDFYLELQDNGFT
DQKRVNPQLIELSKETGIPLVATNDIHYLHREDAEVQDVLICIGTGKTVDDEQRLRIPTD
QLYFKSGEEMARLFPYVKEALENTNIIADKCLLELEFDRSILPQYNPIPDGMTSEQYLYT
LCSEGLVARYESTDRWNDVEGRREIEERLSYELGVIGSMGFADYFLIVWDFIAFSHKNGI
STGPGRGSSAGSIVAYVLQITNVDPMKYHLLFERFLNPERVTMPDIDIDFNDERRDEVID
YVVNKYGHEHVAQIITFGTLAARAAVRDVGRALNIPFGEVDRAAKLIPNQLGIHIDHAIE
VSEDLKKLYDAGGKTRDMLDMAMKVEGMPRHSSTHAAGVIISRDPLTDVVPLQEGSEKTA
LTQYSMENLESIGLLKMDFLGLRTLSIIERTMKWIKEMTGITPNFDHIPDDDLKTYEMLG
HGETTGVFQLESAGMRRVLKDLKPSSFEDIISVLALYRPGPMEFIPKYIQAKHGLLQVEY
PHKDLQPILQDTYGIIVYQEQIMKIASAMAGFSLGEADLLRRAVSKKKREVLDRERDHFV
EGSLKQGYTEEEANRVYDMIVRFADYGFPRAHAAAYGVLAFQTAYLKAHYPNQFMSSMLT
AVMGNHRKVAEYVLECRRMGIGILSPDVNESGVLFTPVHLAVGDNKDEIASSGNIRFGLG
AVKNVGTQAVENIIQIRQDKPFESLLDFCRRIDLKVCNKRVIESLIQAGAFDSLPGHRAQ
QLAMLDETVDAALKWRKERDDLQIQMFDFVESANWDISYPDISPFTVGQQLELERELMGL
YLSGHPLDDYDDLLLQITGVDRLMDLGERSDDARVVVVGMVVSIKTIMTKQGKAMAFMEC
EDQIERCEVVLFPEVWKRSSTWIEKGALLGLRARVQQQDEGFKLLAEEVIPLDSNGLEQL
VKRNSIVQPSSEKFPGRAKSQASNKEPTSGPLKQESLSNPKVNKDNLKSTAEQRVFIKIS
PQAENGQLLVRLKELLQMHRGPMATILFYEKSQKLLALSDQYRIQPSQKLFEELESMLGS
GTVRVK
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgacttcatttgtgcatctacatgttcatagtgaatatagcctcctagacggagccgca
cgtattacggatctcgtgcaacaagctgatgaattcggaatgaagtcattagccttaact
gaccacggggttatgtacggtgcagtaccgttttataaggcatgtaaaagcaaaggtatc
aagcccattatcggttgtgaagtttatttcactgcgggatctcgtaaggagaaaggtagt
agaaaagatcaaccaacctatcatttaattctgttagcaaaaaataaaacaggctaccaa
aatctgatgaaattatgttcaatcggacatttggaaggctttcattataaaccccggatc
gatgaagaagtgcttcggacatatagtgaaggaattatatgccttagtgcatgtttaggt
ggagaggttcctcaatatatattgcagggtcggtatgatgatgcccgcatggcagctctt
cgttacaaggaaatattcggtgacgatttctatttagagttacaagataatggatttact
gatcaaaagagggttaaccctcagctgatcgaactcagcaaagagacgggaattccctta
gtagcaacgaacgatattcattatcttcaccgtgaagatgccgaagttcaggatgttctg
atctgtatcggaacagggaaaacagtggatgatgaacaacggctacgaattccaactgat
cagttatatttcaaaagtggggaggaaatggcccgcttatttccatatgttaaagaagcg
cttgagaatacgaatataatcgctgataaatgtttgcttgaacttgaatttgatcgttct
atattgccacagtacaaccccattcctgatggaatgacatctgaacaatatttatataca
ttatgttcagaaggtctagtagctcgatatgagagtacggatagatggaacgatgtagag
ggtagacgagaaattgaagaaagactctcctatgagcttggtgtcattgggagtatggga
tttgctgattattttcttattgtgtgggatttcatcgcgttctctcacaagaatgggata
tcaactggtcctggccgtggatcttccgctggaagtatagtagcgtatgtgttgcaaatt
acgaatgtggacccaatgaagtatcacttactctttgagaggttcttgaatcctgagcgt
gtgaccatgcccgatattgacatcgatttcaatgatgagcgtcgtgatgaagttattgat
tatgtagttaataagtatggtcatgagcatgtagcacagattatcacctttggtacactg
gctgctcgagctgctgtaagagacgtgggtagggcgttgaatattccctttggggaggtt
gaccgtgcagctaagcttattcctaaccaacttggcattcatatagatcatgcgatagaa
gtgagtgaagatcttaagaagttgtacgatgctggtggtaagactcgagatatgttagac
atggcaatgaaggtggagggaatgccaagacattcctcaacacatgccgcgggtgtcatc
atatcacgtgatcctttgacagatgttgttcctttgcaagaagggagtgagaagacagca
ctaacgcagtactcgatggagaatcttgagagtattggtttgttgaaaatggattttctt
ggactcagaactctctctataattgaacgaacgatgaaatggattaaggaaatgacggga
attacacctaatttcgatcatatacccgatgatgatttgaagacgtatgagatgttggga
catggtgaaacaacgggtgtttttcagttggaatccgcagggatgagacgtgttctgaaa
gatttaaaaccttcaagttttgaagatattatttctgtacttgctctttatcgtccgggc
ccaatggagtttattccaaaatatattcaagcgaaacatggattgttgcaggtcgaatac
ccacataaagacttacagcctatcttgcaagatacgtatggcatcatcgtttatcaagaa
cagatcatgaagattgcctcagcaatggcaggattctcactgggtgaggcagatttatta
cgccgtgctgtatcgaagaagaagcgagaagtattggatcgcgagcgagatcattttgta
gaaggaagtctgaaacaggggtacaccgaagaagaagctaaccgggtctatgatatgatc
gtaaggttcgctgactatggatttccacgagcacatgcggctgcttatggcgtattagca
ttccagacagcgtacttaaaagcgcattatccgaatcaattcatgtcttcgatgttaaca
gctgtcatgggcaaccatcgtaaagtagctgagtatgtgctagaatgccgacgaatgggc
attggcatactctcacctgatgtgaatgaaagtggtgtattgtttacgccagtacattta
gcagtaggagataacaaggatgaaatcgcaagttctggtaatatacgctttggcttagga
gcggtaaagaatgtaggaactcaagcagttgagaatattattcagatcagacaagacaaa
ccgttcgagagtcttctcgatttctgcagacggattgatcttaaggtgtgtaacaaaaga
gttatagaatcacttattcaagctggtgcatttgattctttaccagggcatagagcacaa
cagctagccatgctagacgaaacggtagatgcagcgttgaaatggcgcaaagagcgtgat
gatctacaaattcaaatgtttgatttcgtagagagtgcgaactgggatatttcctatcca
gacatatctccgtttactgtaggtcaacaactagagttagagcgtgaattgatgggattg
tatctctcaggacatccacttgatgactatgatgatctgttacttcagattactggtgtg
gatcgcttaatggatcttggggaacgttcagatgatgcacgcgttgttgttgtaggtatg
gttgtatcgataaaaacaatcatgacaaagcaggggaaggccatggcattcatggaatgt
gaagaccagattgagcgctgtgaagttgtcttatttcccgaagtgtggaaacgtagttcc
acatggatcgaaaaaggggcgctacttggattaagagcgagagtacaacaacaagatgaa
ggattcaagcttctggcggaggaagttatacccttggatagcaatgggttagaacagttg
gtgaagagaaatagtattgttcaaccaagtagtgaaaagtttcctggacgggctaaatca
caagcaagcaataaagaaccaacttcaggaccacttaaacaggaatctctcagtaatccc
aaggttaacaaggataacttgaaatctacggccgaacaacgtgtatttataaaaataagt
ccacaagcggagaatggacaattattggtccgtttgaaagaattgttacagatgcatcgt
ggtccaatggcaaccatccttttttatgaaaagagccagaagttacttgcactcagtgat
caatatcggattcaaccatcacaaaagttattcgaagagttggagagtatgttaggaagc
gggacagtgcgagtgaagtga
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