Paenibacillus crassostreae: LPB68_18490
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Entry
LPB68_18490 CDS
T05196
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcx
Paenibacillus crassostreae
Pathway
pcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB68_18490
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcx03019
]
LPB68_18490
03009 Ribosome biogenesis [BR:
pcx03009
]
LPB68_18490
Enzymes [BR:
pcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB68_18490
Messenger RNA biogenesis [BR:
pcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB68_18490
Ribosome biogenesis [BR:
pcx03009
]
Prokaryotic type
rRNA helicases
LPB68_18490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
CMS1
Helicase_RecD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AOZ93977
UniProt:
A0A167FX49
LinkDB
All DBs
Position
4003259..4004866
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AA seq
535 aa
AA seq
DB search
MKTFAEFGLEPKILQAITELGFEESTPIQDQAIPIAMTGRDLIGQAQTGTGKTAAFGIPL
ISKIAKEEEKIMALIMTPTRELAIQVSEEIGKLSRFKGIRSLAIYGGQDISRQIRSLKNK
PQVIIGTPGRLLDHINRKTIRLSDVQTVVLDEADEMLDMGFMEDIQSILKLVPVERQTML
FSATMPANIQKLAQQFLNNPEHVSVIPKHVSAPLIAQAYIEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELSEALQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHFHFIERVTR
HRIARKPLPTMAEAIEGKQRVTAERLLETVENGDLNEYKGIAIQLLDQYDSVQLLTAAMK
LLTGEKKDTEIQLTPEDPMRAKRRKPDIRSGRKPSGSYGSRSASTSGSGGSGGSGGSSNY
RRDRDSSGGGSRGGYAGKSNYKDGGAGRDSSARSSKPRPSSSTSRPAKRPDSSFE
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacatttgcagaatttggtttagagccaaagattcttcaggccattacggaacta
ggatttgaagaatccacaccaatccaggatcaagcgattcctatcgctatgacaggaaga
gatttaattggtcaagcacaaacaggtacaggtaaaaccgcagcatttggtatacctttg
atctccaagattgctaaagaagaagagaaaattatggctttaatcatgacgccaactcgt
gagcttgccatccaagtatctgaagaaattggtaagttatctcgctttaagggaattcgt
tcattggcgatttacggtggacaagacattagcagacaaattcgttcccttaaaaataag
ccgcaggtcattattggtacacctggtcgtctattggatcatatcaatcgtaaaacaatt
cgcttgagtgatgttcaaacggttgtattggatgaagctgatgaaatgctagatatgggc
tttatggaagatattcaatctatcctgaagcttgttccagtagaacgccaaacgatgctt
ttctccgcgacaatgccagctaacattcagaaacttgcacaacaatttctgaacaatcct
gaacatgtatcggttattcctaagcatgtcagcgctcctctaattgctcaagcttacatt
gaagttcctgaacgtcaaaagtttgaagcacttagccgtcttatcgacatggagtcccct
gaactagcaattgtattcggtcgtacgaaacgtcgtgtagacgaattgtcagaagcattg
caaaaacgtggatattcagcagacggactacatggcgatttatcgcagaaccaacgtgat
gcagttatgcgtaaattccgtgatggcagtattgatgtgttggttgcaacagacgttgca
gcacgcgggctggatgtatctggcgtaacgcatgtaatcaacttcgatctacctcaagat
ccggaaagttatgttcaccgtatcggccgtacaggtcgtgcaggtaaagaaggtaccgct
tggtcattcgtaactccacgtgaaatggatcatttccactttatcgaacgtgttacacgt
caccgtattgctcgtaaaccacttccgacgatggctgaggctattgaaggtaaacaacgc
gttacagctgaaagattgcttgaaacggttgagaatggtgatctgaacgaatacaaaggg
attgcaattcaattgttggatcaatatgattcagttcaattgttaactgcagctatgaag
ttactaacaggtgagaaaaaggatactgaaattcagttgacaccagaagatccaatgcgt
gcgaaacgtcgtaaaccggatatccgtagtggtcgtaagccatcaggaagttatggctca
cgtagtgctagtacttcaggttcaggtggttcaggtggttcaggtggaagcagtaactat
cgtcgtgatcgtgacagtagtggtggcggaagccgtggtggatatgctggtaagagtaac
tacaaagatggtggagctggtcgtgattcttcagcgcgtagtagtaaaccacgtccaagt
agcagcactagccgtccagcaaaacgtccagatagctctttcgaataa
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