Paenibacillus crassostreae: LPB68_18920
Help
Entry
LPB68_18920 CDS
T05196
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcx
Paenibacillus crassostreae
Pathway
pcx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LPB68_18920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcx03019
]
LPB68_18920
Enzymes [BR:
pcx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LPB68_18920
Messenger RNA biogenesis [BR:
pcx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LPB68_18920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
CMS1
ELYS
SUa-2TM
RCS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOZ94052
UniProt:
A0A167FUI7
LinkDB
All DBs
Position
4093205..4094458
Genome browser
AA seq
417 aa
AA seq
DB search
MTFTDLGMIPSIIKALEEENYSTPTPIQEQAIPSVLAGRDLLGCAQTGTGKTAAFALPII
QRLSEQQGAGNVPHRIRSLILTPTRELALQIHENIEAYARYTRLRCCAIFGGVSQKVQER
SLQQGVDILVATPGRLIDLMNQKCIDLQHVQIFVLDEADRMLDMGFIHDVKKIIAKIPLK
KQTLLFSATMPPEISKMVKSLLVDPVKVEITPVSSTANRIEQSVYFVDKGNKQKLLTYLL
ENKSITSALVFTRTKHGANRVVRELVKGDIQAQAIHGDKSQTARQLALSNFKEGTTRVLV
ATDIAARGIDIDELSHVINFNLPNIPETYVHRIGRTGRAGMSGIAISFCEFEEKSYFSDI
EKLIGKRIPVVKDHPYPMLITTEPIKPVVSKNKQPSKTFNKQNSKSGSSQYRGKFST
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgacatttacagatttagggatgataccatccattataaaagcgctagaagaagagaac
tactcaaccccaacaccgattcaagagcaagcgattccatcagttttagcgggaagagat
ttattaggatgtgctcagaccggaacaggaaaaacagcagcttttgcactcccaataata
caacgactaagcgaacaacaaggtgcggggaatgttccacaccgtattcgttctttaatc
ctaactccgactagggagcttgcacttcaaattcatgagaatattgaagcatatgctcgt
tatacccgtttacggtgttgtgctatatttggtggggtttcacaaaaggtgcaggagaga
tctttacaacagggagtcgatattcttgtagctacaccagggcgacttatagatttaatg
aatcaaaaatgtattgatttacagcatgtccaaatattcgtactagatgaggcagatcgg
atgttagatatggggtttattcatgatgtgaagaaaataatcgccaaaattccattaaag
aaacagacattattgttctcagcaaccatgcctccagaaatatccaagatggtgaagtca
cttttagttgatccagtgaaagtggagatcacacctgtgtcctcaactgctaaccgtata
gaacagtccgtttactttgtagataaaggaaacaaacaaaagttattaacttatctttta
gaaaataaatcaatcacttccgctcttgtgttcactcggacaaagcatggtgcgaaccgt
gtagtacgagagttagttaaaggtgatattcaagctcaagccatccatggtgataagtca
caaacggctcgtcaacttgctttaagtaatttcaaagagggtacaactagagtacttgtt
gcaacggatatcgccgcaagagggattgatattgatgaattgtcccatgtcattaacttc
aacctacctaatattccagaaacgtatgtacatcggattggtcgtacaggtagagcggga
atgagtgggatcgcgatctcattctgtgagtttgaagagaagtcttacttcagtgatata
gagaaattgattggaaagcgtattccagtagttaaggatcatccgtatccaatgttgatt
acaacagaaccgattaaaccggtagtttcaaaaaataagcaaccaagtaaaacatttaat
aaacaaaattctaaatctggctcaagtcaatatagagggaaattctcaacataa
DBGET
integrated database retrieval system
