Paenibacillus crassostreae: LPB68_19965
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Entry
LPB68_19965 CDS
T05196
Name
(GenBank) RNA polymerase subunit sigma
KO
K02405
RNA polymerase sigma factor FliA
Organism
pcx
Paenibacillus crassostreae
Pathway
pcx02020
Two-component system
pcx02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pcx00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LPB68_19965
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LPB68_19965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcx03021
]
LPB68_19965
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
pcx02035
]
LPB68_19965
Transcription machinery [BR:
pcx03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LPB68_19965
Bacterial motility proteins [BR:
pcx02035
]
Flagellar system
Flagellar assembly proteins
Stator
LPB68_19965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r4_2
Sigma70_r3
UPF0122
HTH_38
HTH_10
Sigma70_ECF
PhyR_sigma-like
HTH_23
CtpB_N-like
HTH_5
Motif
Other DBs
NCBI-ProteinID:
AOZ94246
UniProt:
A0A167FMQ9
LinkDB
All DBs
Position
4303132..4303920
Genome browser
AA seq
262 aa
AA seq
DB search
MNEQKVSSLNHLELWTLWKEHGDIEAKKKLIENYLHIVDYVSSRLAIGLPKNISKDDLAS
NGVMGLIDAVDKFDYKRGYQFETYGSWRVRGAILDSLRQGDWVPRSVREKAKKIEDAFQH
LEQNYLRSVNDSEMSEYLGVSEKEYHNMLQEVAVMTLCSLEDPIREEETETRLSMLIDEN
AKNPDYKVNEHYLKEALVKGIEKLTDKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLEKNKKLLMENN
NT seq
789 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgagcagaaggtttctagtttgaatcatctggagctatggacgctatggaaagaa
catggtgacatagaggcaaaaaagaaacttattgaaaattatttgcatattgtagattac
gtttctagtagattagctatcggtcttcctaaaaatatttctaaagacgacttggcaagt
aacggtgttatgggtcttatagatgcagtcgataaatttgattataaacgcgggtatcaa
tttgaaacctacggctcatggcgtgttcgtggtgctattctggattcgttgcgacagggt
gattgggtacctcgttccgttagagaaaaagctaagaaaatcgaagatgcctttcaacat
ttagaacaaaattatctgcgttctgtaaacgattcggagatgagtgaatacttaggagtt
tctgaaaaggaatatcataatatgcttcaggaagttgctgttatgacattatgttcttta
gaagatccaatccgagaagaggaaacagagacacgcttaagtatgttgatagatgagaat
gcaaaaaatccggattataaggtgaatgaacattatttgaaggaagcattagttaaaggt
atcgaaaaattgacagataaagaacgtaccgtagtttcacttctttattatgaagatctt
tcacttagtgagatcgccgaagtcatgtcactttcgccttctcgaatttcacagcttcac
tcaaaagcaatccttaggctgagaggcacccttgaaaaaaataaaaagttattaatggaa
aacaactaa
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