KEGG   Paenibacillus crassostreae: LPB68_19965
Entry
LPB68_19965       CDS       T05196                                 
Name
(GenBank) RNA polymerase subunit sigma
  KO
K02405  RNA polymerase sigma factor FliA
Organism
pcx  Paenibacillus crassostreae
Pathway
pcx02020  Two-component system
pcx02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pcx00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    LPB68_19965
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    LPB68_19965
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcx03021]
    LPB68_19965
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:pcx02035]
    LPB68_19965
Transcription machinery [BR:pcx03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     LPB68_19965
Bacterial motility proteins [BR:pcx02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    LPB68_19965
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 UPF0122 HTH_38 HTH_10 Sigma70_ECF PhyR_sigma-like HTH_23 CtpB_N-like HTH_5
Other DBs
NCBI-ProteinID: AOZ94246
UniProt: A0A167FMQ9
LinkDB
Position
4303132..4303920
AA seq 262 aa
MNEQKVSSLNHLELWTLWKEHGDIEAKKKLIENYLHIVDYVSSRLAIGLPKNISKDDLAS
NGVMGLIDAVDKFDYKRGYQFETYGSWRVRGAILDSLRQGDWVPRSVREKAKKIEDAFQH
LEQNYLRSVNDSEMSEYLGVSEKEYHNMLQEVAVMTLCSLEDPIREEETETRLSMLIDEN
AKNPDYKVNEHYLKEALVKGIEKLTDKERTVVSLLYYEDLSLSEIAEVMSLSPSRISQLH
SKAILRLRGTLEKNKKLLMENN
NT seq 789 nt   +upstreamnt  +downstreamnt
ttgaacgagcagaaggtttctagtttgaatcatctggagctatggacgctatggaaagaa
catggtgacatagaggcaaaaaagaaacttattgaaaattatttgcatattgtagattac
gtttctagtagattagctatcggtcttcctaaaaatatttctaaagacgacttggcaagt
aacggtgttatgggtcttatagatgcagtcgataaatttgattataaacgcgggtatcaa
tttgaaacctacggctcatggcgtgttcgtggtgctattctggattcgttgcgacagggt
gattgggtacctcgttccgttagagaaaaagctaagaaaatcgaagatgcctttcaacat
ttagaacaaaattatctgcgttctgtaaacgattcggagatgagtgaatacttaggagtt
tctgaaaaggaatatcataatatgcttcaggaagttgctgttatgacattatgttcttta
gaagatccaatccgagaagaggaaacagagacacgcttaagtatgttgatagatgagaat
gcaaaaaatccggattataaggtgaatgaacattatttgaaggaagcattagttaaaggt
atcgaaaaattgacagataaagaacgtaccgtagtttcacttctttattatgaagatctt
tcacttagtgagatcgccgaagtcatgtcactttcgccttctcgaatttcacagcttcac
tcaaaagcaatccttaggctgagaggcacccttgaaaaaaataaaaagttattaatggaa
aacaactaa

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