Plasmodium cynomolgi: PCYB_042010
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Entry
PCYB_042010 CDS
T02490
Name
(RefSeq) eIF-4A-like DEAD family RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pcy
Plasmodium cynomolgi
Pathway
pcy03013
Nucleocytoplasmic transport
pcy03015
mRNA surveillance pathway
pcy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pcy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PCYB_042010
09122 Translation
03013 Nucleocytoplasmic transport
PCYB_042010
03015 mRNA surveillance pathway
PCYB_042010
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcy03019
]
PCYB_042010
03041 Spliceosome [BR:
pcy03041
]
PCYB_042010
Enzymes [BR:
pcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCYB_042010
Messenger RNA biogenesis [BR:
pcy03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PCYB_042010
Spliceosome [BR:
pcy03041
]
Complex C
Other components
EJC/TREX
PCYB_042010
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
PCYB_042010
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Utp25_C
Motif
Other DBs
NCBI-GeneID:
14695837
NCBI-ProteinID:
XP_004225400
UniProt:
K6UQC1
LinkDB
All DBs
Position
4:431377..433039
Genome browser
AA seq
472 aa
AA seq
DB search
MATMDHSVQDELVDYEDDENILDAKDVKGNLDSSLLNNNSKGVNENGAMRGSYATVHTGG
FKDFFLKPELLRAISESGFEHPSEVQQETIPAAITGTDILCQAKSGMGKTAVFVLSILQQ
LETNDGKDIKEEKEMNNTTSNNIGGDLTNGNGAPKNKFVRCLGLAHTRELAYQIKNEFDR
FSKYLKGVRCEVVYGGIAMSKHIKMFKEESVPHIIIGTPGRILALIREKYLLTEKIQHFV
LDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNPVEIFIDDE
AKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKLLTECNFPS
IAIHGGLDQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHR
VGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYINQ
NT seq
1419 nt
NT seq
+upstream
nt +downstream
nt
atggccaccatggaccacagcgtgcaggacgaactcgtggactacgaagacgatgaaaac
atattagatgctaaggacgttaagggcaatttggacagtagtcttttaaacaacaacagc
aagggggtgaatgaaaatggggccatgcgaggcagctatgccacggtgcacacgggaggg
tttaaggatttttttttgaagccagagttgcttagggccataagcgagagcggcttcgag
cacccctcggaggtgcagcaggagaccatccccgcggccatcacgggcacggacatcctc
tgccaggcgaagagtggaatgggtaaaacggccgtgtttgtgctgtccatcctgcagcag
ctggagacgaacgacggaaaggatataaaggaagagaaggaaatgaacaacaccacgagc
aacaacatcggaggagacctaaccaacggcaatggagcacccaaaaataaattcgtcaga
tgcctcggactggcacacacacgagagttagcctaccaaatcaaaaacgaattcgatcga
tttagtaaatatctaaaaggggtccgatgtgaagtcgtttatggaggaatcgcaatgagc
aagcacataaaaatgttcaaggaggaaagcgtcccccatatcattataggaaccccagga
cgtatcctggcactcataagagaaaaatatttattaacagaaaaaatccaacattttgtt
ttggatgagtgtgataaatgtttggaaaaattggacatgagaagtgacgtgcagaagatt
tttatttccactcctttaaagaaacaggtgatgtttttttcagccaccatggcaaaagaa
atgagagatgtgtgcaaaaaatttttacaaaatcctgtggagatttttattgatgatgaa
gctaagttgaagttgcacggattgctacaacactatgtgaagttacaagaaaaggacaaa
acgagaaagctaattgaaattttggacgccttagaatttaaccaagttattatttttgta
aaatctgtcactagggctatcaccttggataaattactgaccgaatgcaacttcccttcc
attgccatccatggtggccttgaccaacaggagagaattgaacgatacgataagtttaaa
aagtttgaaaatcgaatattagtctccacagatttgtttggcagaggtattgacatagag
cgagtaaacattgtcattaactatgacatgcctgaaaattcagattcttatctccacaga
gtcggtcgagctggtcgatttggtaccaagggactcgccgttacgttcgtttcttctcaa
gaggatactttagctttgaatgaggtccagaccaggtttgaagttgccatttcggaaatg
cccaacaagatcgactgcaatgagtacatcaaccagtag
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