Plasmodium cynomolgi: PCYB_071720
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Entry
PCYB_071720 CDS
T02490
Name
(RefSeq) exoribonuclease
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
pcy
Plasmodium cynomolgi
Pathway
pcy03008
Ribosome biogenesis in eukaryotes
pcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcy00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PCYB_071720
09123 Folding, sorting and degradation
03018 RNA degradation
PCYB_071720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcy03021
]
PCYB_071720
03019 Messenger RNA biogenesis [BR:
pcy03019
]
PCYB_071720
03009 Ribosome biogenesis [BR:
pcy03009
]
PCYB_071720
03016 Transfer RNA biogenesis [BR:
pcy03016
]
PCYB_071720
Transcription machinery [BR:
pcy03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
PCYB_071720
Messenger RNA biogenesis [BR:
pcy03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
PCYB_071720
Ribosome biogenesis [BR:
pcy03009
]
Eukaryotic type
Pre-60S particles
RNases
PCYB_071720
Transfer RNA biogenesis [BR:
pcy03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
PCYB_071720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
SRI
Motif
Other DBs
NCBI-GeneID:
14692018
NCBI-ProteinID:
XP_004221617
UniProt:
K6UU42
LinkDB
All DBs
Position
7:<367365..>371396
Genome browser
AA seq
1327 aa
AA seq
DB search
MGVPTFYRWLVTRYPKIAKATYETRDSDVYARRTKIRDGHHNGEKKKDTYRVPDLSDYVN
NTDENHCSDNINGYYDNLYLDMNGIIHLCSHSDNSRRAKSNEEIFLNIFLYIERLFDIIE
PKKLLYMAIDGVAPKAKMNQQRSRRFKSILCSEIERNAYIELREKFLSENRTVPEELTFW
DSNIITPGTQFMYELSVALKYFVEHKITNDEKWKNIVVIFSDANRSQPGYDPNTRHVIHG
MDADLIMLSLASHEPYFYILREIIILDSKGEEKVQNKDFVGVLKSKQDLPLCTTHIRKTK
KMYTKYNDPHYANINRSHNCMINSENWNELQILDLTILREYLSKDFFFDSTYNLERCIDD
FIFICFLCGNDFLPHLPSISIAAGSIDQLVLLYQKVLPVLGDYLINEGKINLKPFSKYVS
FIAEVERETFISQYDFKKKREKRDQQKDSLKRVKCTDEQNDGSGNIAAMLTDGAKNSRDY
DSVGGETGNSNRGSLQFNDVNMKRGSNQSDAMVMGTQTGTASASSLASAASPPAPLNKKM
LYESKIQSMQPIRNFKFKEKKGEKSINFLVRPASSSISEQVPNNEPSTLQSVIEEEAPAS
GEASQCKAQLNGEAPQCKEQLNGEAAQCKEQLNGEAAQPGGPPPKGDLQWDIEDEETKRI
NDINEFNMLLKEAIKKANECENPKEDVELGGDENPELIRIKYYKSKFHLDESDHVDDFVK
EVVYKYIEGLSWVLLYYFQSCPMWHWYYPYYYAPLSSDLIIDNVNFIFHKDEPILPLEQL
LCVLPSNSSHCLPKSYQELMVRYDSPIIDFYPKTFKEEENGKKYKYQWVILLPFVDKERI
IKHARELNDTLTEEERKRNRRGMNKIYMNCSHSLSKQITKSIKAYVKKMKGEGEKKNDAD
MSSTGNLNANSPAGNTIEGGEPLALSEGPTNVEEAAEQQQKGDGNNSGNTYDQFFKNMNL
SIPISNNRDMNLFGYLNCKHEDSDVNILKKIFKFSSNFSTTCNSAFFVQPELIKHRSSLL
PNHRRPRKVLTVVDINNEERKLRFNAPAAKRMILNSLSTNHPHIYSYAKGSQPKSYVVNY
GSGGYGGGGYGSGNYGGGGYGGGGYGGGGYGGYGSGNYGGGGYGNANYGGHVGRDHRSNY
SSANYSSHMSAPKNHASYHHGPNYQSHQNHQAYQNQNQNPSYGNSYAPPIYKNVAMHKGP
KNATAAHTYDSKKESNYNNAYDSSYASHRNPPSRENPNYDAPYNTSHSARYKSENRGGYG
THGGHTHGNYKHQSGYGNHGNHNSSHNSEVNQHKRDTFKSSAQNGVPGINKKANYNGRSV
PYKDREY
NT seq
3984 nt
NT seq
+upstream
nt +downstream
nt
atgggagtacccaccttctaccgatggctggttacaaggtacccaaaaatagccaaagca
acctacgagacgagagacagcgatgtgtacgctaggagaacgaagattcgggatggacat
cataatggggagaaaaagaaggacacgtatagagtaccagacctgagcgattatgtaaac
aacacagatgaaaaccattgctcagacaacataaatggctactatgataatttgtatctc
gacatgaacggaataatccacctgtgctcacatagtgacaatagcaggagagccaaaagt
aatgaagaaatatttttaaatatcttcttgtacatagaacgtctgtttgatataatcgaa
ccaaagaaactgctctacatggccattgacggagtagctcctaaggctaaaatgaaccag
cagagaagtcgaaggtttaagtctatcctctgctcagaaattgaaagaaatgcatatatc
gaattgagggaaaaatttttatcagaaaatcgaacagttcctgaggaactcaccttctgg
gacagtaacattataaccccagggactcagttcatgtatgaattatcagttgctttgaaa
tatttcgtggagcataaaattacaaatgatgagaaatggaaaaacattgtggtgattttt
tctgatgctaatagatctcaacctgggtacgatcctaatacgagacatgtaatccacggg
atggacgctgacttaatcatgttatcgctagctagccatgaaccatatttttacatttta
agagaaataattatcctagattcgaaaggagaagagaaggttcaaaataaagactttgta
ggcgtgctcaaaagtaagcaggatttacctctctgtaccacacacataagaaaaacgaaa
aaaatgtataccaaatataatgacccacattatgctaacataaacagaagtcataattgt
atgattaatagtgaaaactggaacgaattgcagatattggacttaaccattttgagggaa
tacctatcgaaagatttctttttcgattctacttacaacttggaaagatgtattgacgat
tttatttttatctgttttctgtgtggaaatgactttttaccacatttaccttccatttcg
attgctgcggggagcatagatcagctagttttactataccagaaggtgctgcccgtgttg
ggggactacctaattaacgaggggaagattaatttaaagcccttttccaaatatgtttcc
ttcattgctgaggtcgaaagggaaacgttcatttcgcagtacgattttaagaagaagaga
gaaaaaagggaccagcaaaaggactccctaaagagggttaagtgcactgatgagcaaaat
gatggttcaggtaacatcgctgcgatgctgacagatggtgcaaaaaatagtagagattat
gatagtgtgggaggggaaactggaaattctaatagaggaagtctacagtttaatgacgtt
aacatgaagaggggcagcaatcagagtgacgccatggtaatgggaacccaaacagggaca
gcatcagcaagctcgctagcctctgcagcatcgcctcccgcaccattgaataagaaaatg
ctgtacgagtccaaaatacagagcatgcagccgatcaggaatttcaagtttaaggaaaag
aagggtgagaagagtatcaacttcctcgttcgccccgcgtcgtcttccatttcggagcag
gtgcccaacaacgaaccgtcgactttgcagagcgtgatcgaggaggaagcccctgcatcg
ggggaggcatcacaatgtaaggcgcagctcaacggggaggcaccacaatgcaaggagcag
ctcaacggggaggcagcacaatgcaaggagcagctcaacggggaggcagcacaaccaggg
ggccctcccccgaaaggagacctccaatgggacatagaagacgaggaaaccaaacgaatc
aacgatattaacgagtttaacatgctccttaaggaggcaatcaaaaaggcaaatgagtgt
gaaaatcccaaagaggatgtagaacttgggggggatgaaaacccagaacttatcagaata
aagtactacaagtccaagttccatttggacgagagcgaccatgtagacgatttcgtcaaa
gaagtagtatacaaatatattgaggggttgtcctgggttcttttatattatttccaatcg
tgtcccatgtggcattggtattatccatactattatgcacccctgtcatcagacttaatt
attgacaatgtgaattttatcttccataaggacgaaccgattcttccccttgagcaacta
ctctgtgtgttgccatcgaattctagtcactgcttacctaagagttaccaagaattaatg
gtccgatatgattcccccattattgatttttacccaaaaacttttaaggaggaagaaaat
gggaagaagtacaaatatcagtgggttatcctactgccttttgtagacaaggagagaatt
atcaaacatgctagagagctgaatgacaccttgactgaagaagagaggaagaggaatcgt
aggggaatgaacaaaatttatatgaactgttcacactctctttcgaagcaaattaccaag
tcgataaaagcatacgtgaagaaaatgaagggggagggtgagaagaaaaacgatgctgat
atgagtagcacaggtaatttgaatgcgaattctcccgctgggaataccatcgaggggggg
gaaccccttgcccttagcgaaggaccaaccaacgtggaagaagcagccgagcagcaacag
aaaggggacggtaacaacagcggaaacacatacgatcagttttttaagaacatgaactta
agtatcccgataagtaacaaccgagacatgaatctgtttggctatctcaattgtaaacac
gaagacagtgacgttaacattttaaagaaaatttttaaattttcgtcgaatttttccacc
acgtgtaatagcgctttctttgtccagcccgaacttataaagcatcgctcttcgcttttg
ccaaaccataggagaccaaggaaggtgctcaccgtggttgacatcaacaacgaggagagg
aaactcaggttcaatgcacccgcggcgaagaggatgatcttgaacagcctaagtaccaac
cacccacatatttactcctacgcgaaggggagtcagccgaaaagttatgtcgtaaattac
ggcagcggaggttacgggggaggcggctatggaagtggtaactacggaggaggtggttac
gggggaggcggttacgggggaggcggctacggaggctacggaagtggtaactacggagga
ggcggctacggcaacgccaattacgggggccacgttggccgggaccaccgaagcaactac
tccagcgcgaattacagctcgcacatgagtgcccccaagaaccacgcttcctaccaccac
ggcccgaattatcagagccaccaaaatcatcaggcctatcaaaatcaaaatcaaaatccc
agttacggcaacagttacgcgccaccgatctacaaaaacgtggccatgcacaagggccca
aaaaatgcaaccgcggcgcacacgtacgacagcaaaaaggagagcaactataacaacgcc
tacgacagtagctatgcatcccatagaaacccgcccagcagggagaatccgaactatgac
gcgccctacaacacttcccacagtgcgaggtacaagagcgagaaccgcggcgggtacggg
actcacggagggcacactcatggcaattacaaacaccaaagcgggtacggaaaccatggc
aaccataacagcagccataacagcgaagtcaaccagcacaagcgagacaccttcaaaagc
agcgcgcaaaacggcgtgccagggattaacaagaaggccaattacaacggtagatccgtg
ccgtacaaggacagggaatactga
DBGET
integrated database retrieval system
