Plasmodium cynomolgi: PCYB_115430
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Entry
PCYB_115430 CDS
T02490
Name
(RefSeq) ATP dependent RNA helicase
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pcy
Plasmodium cynomolgi
Pathway
pcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCYB_115430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcy03019
]
PCYB_115430
03041 Spliceosome [BR:
pcy03041
]
PCYB_115430
03009 Ribosome biogenesis [BR:
pcy03009
]
PCYB_115430
03016 Transfer RNA biogenesis [BR:
pcy03016
]
PCYB_115430
Enzymes [BR:
pcy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
PCYB_115430
Messenger RNA biogenesis [BR:
pcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
PCYB_115430
Spliceosome [BR:
pcy03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
PCYB_115430
Complex C
U4/U6.U5 tri-SnRNP related factors
PCYB_115430
Ribosome biogenesis [BR:
pcy03009
]
Eukaryotic type
Pre-60S particles
Helicases
PCYB_115430
Transfer RNA biogenesis [BR:
pcy03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
PCYB_115430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
DEAD
MTR4_beta-barrel
DEXQc_Suv3
Helicase_C
nSTAND3
MTR4-like_stalk
Motif
Other DBs
NCBI-GeneID:
14693892
NCBI-ProteinID:
XP_004223470
UniProt:
K6UL95
LinkDB
All DBs
Position
11:complement(2006703..2011174)
Genome browser
AA seq
1401 aa
AA seq
DB search
MSGGNIDDLFNVFEENDIVDNISTKDEEGGERGSGGVQADNHRHDEVNEETLGRIRTEKG
AVGGERHCGGENERGTHPGEGDAGGGGQGDTKGEAELNAQQRGVPSAPLGTPQINVENLI
SCKKRDQKVQSQIKQEIYNDMQNVDGTVRSASSKVRKLNEEQNGENGPNGHNSQNGQSGQ
NGRKGQSHADESGPVEETLIENSKTINNDDVLVLEEFRSDVNCIHKCIRPRSYVHNKLSE
TLTPARTYKFELDTFQKKSIECLERNESVLVSAHTSAGKTVIAEYAIALGLRDKQRVIYT
SPIKALSNQKYRDLSEEFKDVGLITGDISINPDASIIVMTTEILRSMLYRGSSLTKEVKW
VIFDEIHYMRDRDRGVIWEETIILLPLMVRFIFLSATIPNGIQFAEWVSSIKSQACHIVY
TDYRPTPLQHYIYPTSSESVFLICDENKDFKKNNFIKAVNAIKEKNNMSEDGQHQNGNSK
HNRRAKKNVYDIEKIVQMCHSRNYTPLIIFAFSKKECEINATTMHKVDLTDDTEKEVIKE
LYENAIQILADDDRALPQVQFILPLLLRGIGIHHGGLLPIIKEIIEIMFQESLLKVLFST
ETFSMGINMPAKTVVFTSLKKFDGVEKRLITSGEYIQMAGRAGRRGLDDRGIVIIMLDSP
LHWREAEKLFVGEANRLVSQFHLGYNMILNLLRIEGITPEFMIERSFIQYQMKKNLFQKI
MVKKKVEEKIKEIFNQLTSVYLDKDNQEISKENLLKKIMDHNYECISGERGEISATELGR
TLHGGQNGNAKGGVVPPGVEAQIGIDEKDVTDEKDGTHAEHTVDVGRSETVATLNDENFT
INDQLKNYNTVFSCISNYYILRNKLIELGETYRSILTARKNITPYLAMGRLLYLVEDDFR
WGWAICIEGKIVERAIGGRTAGRNNATRGAKGANSAKGANSTNASNPANHANEADGGVLL
VDCLVPYSQNRKRKLSQSDNEEEEDTHKEFEPATDRMKAKWKLITFHVKCIYQISAVVLN
LDKPFDKKNEEQIMNAKMKYNTMVTCLKGEKNIPVINPHQMEIKDEGFLKIVKNINYHEH
MLNRNKLLNSRNLHKYYQLYNMYVALQFEKNLLEANIEKCRFIVLKKELKNMLVLLQGLN
YIEISHLEGEGAQKGTSAKEIKGEELMVEDIKGEEVKGEDIKGDEVKGEDVQLEKVQSEE
VKAEHQTHQNGRSSGGDLAPTEETSYVVTMKGQIASAILSVDELVISELFFSNFFSKYNY
DYICAFLSCFVYDESSNKEVAINDPVLVEGYEQIIKTATHLSNKMNECGMNINLKDYLDK
FKSAIMPIVLQWVRGYSFMEILTDSQIYEGSIIRTLRRLDELLRQMICAFRGINNDSMCE
ILTEATKKLRRGIPFSPSLYL
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaggtaacatcgatgacttatttaacgtgtttgaggaaaatgacatagtagat
aatatttccacaaaagatgaggagggtggtgaaaggggaagtggcggagtccaggcggat
aaccatcgccatgacgaagtgaatgaagagacactcggtaggatccgtactgagaagggt
gcagtgggaggagagaggcactgtggtggggaaaacgaaaggggtacccaccccggtgag
ggtgatgcagggggaggcggacaaggagacactaaaggggaagcggaactgaatgcgcag
cagcggggcgtaccctccgcccccctggggacaccgcaaatcaacgtcgaaaacctcatt
tcgtgcaaaaagagggaccagaaggtgcagagccaaatcaagcaggaaatatacaacgac
atgcaaaacgtcgacggtacggtcagaagtgcaagcagcaaagtgaggaagttgaacgaa
gagcaaaacggcgagaacggcccaaatggccataacagccaaaacggccaaagcggccaa
aacggcagaaagggccaaagccacgccgacgaaagcggaccggtagaagaaacactaatc
gaaaatagcaaaacgataaacaatgacgatgtactcgtgttggaagagttccgcagtgac
gtcaattgtattcacaagtgcatccggccaaggagctacgtccacaacaagctaagtgag
actctcactccagccaggacgtacaaatttgaattagacaccttccagaaaaaatccatt
gaatgtttggagcgaaacgaaagcgtcctcgtgtcagcacacacgtccgccggaaaaact
gtcatcgcagagtacgccatcgctctagggttaagggacaagcaaagagttatctacacg
agccctataaaagcgttaagtaatcaaaaatacagagacctgagtgaagaatttaaagac
gtcggattgatcacaggagatatttccataaatcctgatgcttccatcatcgtcatgacg
accgaaattttgagatccatgttgtacagaggctcttccctaaccaaagaagtaaagtgg
gtcatttttgacgaaatccattacatgcgagacagagatagaggagtcatatgggaagaa
accatcattttactaccactcatggtgcgctttattttcctaagtgcgaccatcccaaat
gggattcagttcgcagaatgggtaagcagcatcaaaagtcaagcttgtcacatagtctac
acagattatcgacccacccctctacagcattatatctacccaacatctagcgaaagcgtt
tttctcatttgcgatgaaaataaagattttaaaaaaaataatttcatcaaagcagtcaat
gctatcaaggaaaaaaataacatgtcagaagatggtcagcaccagaatggtaatagtaag
cataacagacgggcaaaaaaaaatgtgtatgatattgaaaaaattgtacagatgtgccac
tctcgtaattacactcctctgatcatttttgcattttccaaaaaggagtgcgaaataaat
gcaactaccatgcataaagtggacctaacggacgacacagaaaaggaagtcataaaagaa
ttgtacgaaaacgccatccaaattttagctgatgatgatagggctttacctcaggtccaa
tttattcttccactcctcttaagaggaataggaattcatcatggtggcctactaccaatc
attaaagaaataatagaaattatgtttcaagaatctttgctgaaagttttattcagtaca
gaaactttttccatgggaattaatatgccagcgaaaacggtcgtttttacatccttgaaa
aaatttgatggagtagaaaaacgattaataacatcgggggagtatattcaaatggctggg
agagctggaagacgtggattagatgacagaggaatcgttatcattatgttagatagtcca
ctacattggagagaggcggaaaaattattcgtcggggaagccaacagattagttagtcag
ttccacctggggtacaatatgattttaaatctactcagaatagaaggaattactccagag
tttatgatcgagaggtccttcattcagtaccaaatgaagaaaaatctcttccagaaaatt
atggtcaaaaaaaaagttgaagaaaaaattaaagaaatttttaaccaactgactagtgtc
tacctggataaggataaccaggagatcagtaaagaaaatcttttgaagaaaattatggat
cataattatgagtgcatctcgggggagcggggggaaattagtgcgactgaattggggcgc
accctacatggcggacaaaatggaaacgcgaaaggaggtgttgtacccccaggggtggaa
gcacaaataggtatcgacgagaaggacgtcaccgacgagaaggatggcacccacgccgaa
cacaccgtcgacgtcgggaggagcgaaacggtcgccacgctcaacgatgaaaacttcacc
ataaacgatcagctcaaaaactacaacacggtgttttcctgcatttccaattactacata
ttaagaaacaaactgatcgagctgggcgaaacctacaggtctatactgactgccaggaaa
aacatcaccccctacttggccatggggagactgctctacctggtggaggacgacttcaga
tggggttgggccatatgcattgagggaaaaattgtggagcgagcgatcgggggccgcacc
gccgggcgcaacaatgccaccaggggcgcaaaaggggcgaattcagcaaaaggggcgaat
tcaacaaacgcttctaaccccgctaaccacgctaacgaagctgatggcggcgtgctgctc
gtggactgcctagtgccctacagccaaaacagaaaaaggaaactgtcccaaagtgacaac
gaagaggaagaagacacgcacaaggaattcgaaccagctaccgataggatgaaggctaaa
tggaaactcatcacctttcacgtcaaatgcatctaccaaatttctgctgtcgtcttaaac
ctagataaaccatttgacaaaaaaaatgaagaacaaattatgaacgccaaaatgaaatat
aacaccatggtgacctgcctgaaaggagaaaaaaacatcccagtcattaacccacaccaa
atggaaatcaaagatgaaggcttcctcaaaatcgtaaaaaatattaactaccacgaacat
atgttaaatagaaataaattacttaatagtcgaaacctgcataagtattaccaactgtac
aacatgtatgtcgctttgcaattcgagaagaaccttttagaggccaacatagagaagtgc
cgattcatagtcttaaagaaggaactcaaaaatatgctcgtccttctgcaaggcctgaat
tatatcgaaatttctcacttggaaggggagggcgcgcagaaggggacaagcgccaaggaa
attaagggggaagaactcatggtggaagacatcaagggggaagaagtcaagggggaagac
atcaagggggatgaagtcaagggggaagacgtccaactggagaaggtccaatcggaggaa
gtcaaagcagagcatcagacccaccagaacggacgcagcagcggaggggacctcgccccg
accgaagaaacaagctacgtcgtgaccatgaaaggacaaatcgccagtgccatcctcagt
gtggacgaattagtcatttcggagttattcttctccaacttttttagtaagtacaactac
gactacatatgtgcctttctctcctgctttgtctatgacgaatcctcaaacaaagaagtc
gccattaacgacccagttcttgtggagggctacgaacagataatcaaaaccgctacgcac
ctttccaataaaatgaacgaatgtggaatgaacataaatttgaaggactacctggacaaa
tttaagtccgccatcatgcccatcgtcttgcagtgggtgcgcggctactcctttatggaa
attctcaccgactcgcagatatacgaggggtccatcatacggacgctcaggcgcttggac
gaactgctcagacaaatgatctgcgcgttcagaggaatcaacaacgacagcatgtgcgaa
attttgacagaggcaaccaaaaagctacgacgcggtatccccttctccccttctttgtac
ctataa
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integrated database retrieval system
