Plasmodium cynomolgi: PCYB_126540
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Entry
PCYB_126540 CDS
T02490
Name
(RefSeq) 3'-5' exonuclease domain containing protein
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pcy
Plasmodium cynomolgi
Pathway
pcy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCYB_126540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcy03019
]
PCYB_126540
Messenger RNA biogenesis [BR:
pcy03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
PCYB_126540
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
Motif
Other DBs
NCBI-GeneID:
14694462
NCBI-ProteinID:
XP_004224036
UniProt:
K6UWQ2
LinkDB
All DBs
Position
12:<2447118..>2450528
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AA seq
1136 aa
AA seq
DB search
MEHCSKRIEELVRGKGGEVELLNDENDYLIKQLLKNVIEIVKLTNRLSTNCLYESRVDDM
SNDEQVKKIQRDLLKTVHDLLLYSSNEKTKSSITWELNGDYLTLANNYHIISNTLDEIFT
RSKDCFRFFHVKDKEASMLACKSSKLEENFLPEFASSPREYGPHRGAGKSADSDSEEEKD
DNAEGRTNTDRNPNDTKSKEPNLHERTGDDEERVNTFQLIFQSNILHVQSESEESSTEKG
NEKKTKKEMNKNSKKRRPSKRKVKSEENPQMIDSLSPFRNRSRKIQFAWLHLINNYVTFF
IPRLTVKHNRLAELERGFVEGVKCLQSYIQKKRKVLRYRELFKGNNLKNISCGDILEEIF
EEDDMGDAAEGTMVVVKAPHSCSSSEDSSEELTVTPEWLTSPPDEYFFWKMLKRLDKDIN
KYGPQFSNLGHPYNYEINDMINRYHEWDESVSPFVKVTPELQKPVQLSEKECKIISNEGE
LVEMVHTIKEKCSKMSLSLVVNYKNTYRGFTSLILVGTEECDYIIDTLHMFEQMHELNEV
TTDPNILKILYKSKNITPVMQKDFSIYFVNIIDISICSDFLSVRNSLPYLVHNYFHVSVN
SAGHGLNALTRPLSPDMVHNLRTPFHYLYYLFEYVKTDLYFNYIFAHYRRAGHAQGGGEG
EMGSVGAMGAVGAVDPMDAMGSVDPMDAMDAVDAMDTLQRMLDQDGPPPSNVYVHFENIK
FEDTSEEEQKYGEEIIRKVFRESNKMCLLEYKVKDVCDVEKTKEKIKTIIKTSYYNSTSC
DNLIENILVWREKLAKRNDESPDSIINIHTIISIILNMPTSISSLKNNIIPMSNHMSENL
ETLFEIIIKSNMKKKTNPQFYRNFIQNEKSNICDCTSEQELNSVQRPFPREAQRGVGGDD
VDGTDETNGILIVPPRMHFQSISEGAQREVHPPDDEEDAAEDGGGDGVGDDVGDGVVNDV
GNDVGDDPCCAPRSRCDGRDNEQEAREEGGTPTVSAPDQTFTLERTFFGNDESDEEASKK
HKTLGSKNGKYENYALLSSLLSYVKEKNQEMCKTSEHPEKEKNVKTEKEGAQMQKQRTIY
KSAKRQLPHDVANNSSGQKKIKQTQHQSYNQQYNIKNRKGLYSKNILSEMNKKWNV
NT seq
3411 nt
NT seq
+upstream
nt +downstream
nt
atggagcactgcagtaagcggattgaagagctggtgaggggaaaaggtggggaggtcgaa
ctgctcaacgacgaaaacgactacttaataaagcagttactaaaaaatgttatcgaaatt
gtgaaactaacaaacagactctccacaaattgtctctacgagagcagagtagatgacatg
tccaacgatgagcaggttaaaaaaatccaaagggatttactaaaaacggtgcatgacttg
ttactatacagctctaatgaaaaaacaaaaagttcgattacgtgggagctgaacggtgac
tacttaaccctagctaataattatcatatcatatcgaatacgctggatgaaatcttcacc
agatcgaaggactgttttcgattctttcatgttaaagataaggaggcttcaatgttggca
tgtaaaagtagcaaacttgaggagaatttcctccccgagtttgcttcttccccaagggag
tatggaccccacaggggggcaggcaaatcagcagatagtgattcagaggaggaaaaggat
gataatgcagaggggagaaccaacacagataggaaccctaacgatacgaagagtaaggaa
cccaatttgcatgaacgaactggtgatgatgaagaaagagttaatacctttcagctaatt
ttccaatcgaatatcttgcacgtgcagagcgaatcggaggagagttccacagagaaggga
aatgaaaaaaaaacaaaaaaggaaatgaacaaaaatagtaaaaaaaggaggccatcaaag
aggaaggtaaagagtgaagagaatccccaaatgatagatagtctctccccatttaggaat
agatcgagaaaaatacagtttgcctggttacacctgattaacaattatgttaccttcttc
atcccccgtctaactgtgaaacataacagacttgctgagctggagagaggctttgtggaa
ggggtcaagtgcctacaaagctacatccaaaaaaagaggaaggttcttcgatacagggaa
ctttttaaaggcaataatctgaagaatataagttgtggggatattctcgaagaaatattt
gaagaggatgatatgggagacgcagcggagggaacgatggtagtggtgaaggcaccccac
tcgtgcagcagttcggaggactcctcggaagagcttactgtcaccccggaatggcttact
tcccccccggatgagtattttttttggaagatgctaaaaaggctagataaggacataaac
aagtatggtccccaatttagcaacctgggccatccgtacaattacgaaataaatgacatg
attaatcggtatcacgaatgggatgaaagtgtatcccccttcgtgaaggtaaccccagaa
ctgcagaaaccggtgcagttaagtgagaaggagtgcaaaattattagcaatgaaggcgaa
ctggtagaaatggttcatactattaaagaaaagtgttctaaaatgtctctctcccttgtg
gtgaattataagaatacctaccgaggtttcacttccctaattctagtgggaacagaagag
tgtgattacatcattgatacactgcacatgttcgagcagatgcatgaactgaacgaggtt
actacagatccgaatatcctcaaaattttgtacaagtcgaaaaatatcacaccagtaatg
cagaaggatttctcgatctactttgttaacattatcgacatttcgatttgttcggatttt
cttagcgtgagaaattccttgccatatctggtgcacaattacttccacgtcagtgtcaat
tctgctggtcatggattaaatgctctcacaagaccgttgtctcctgacatggttcataat
ttgaggacgcctttccactatctgtactaccttttcgagtacgtcaaaacggatttgtat
ttcaactacatatttgcgcactaccggcgggcgggccacgcgcaggggggaggcgaaggt
gagatgggctcggtgggtgcgatgggcgcggtgggcgcggtggacccgatggatgcgatg
ggctcggtggacccgatggatgcgatggacgcggtggacgcgatggacactctgcaaagg
atgctcgaccaagatggcccccccccaagcaacgtctacgtacacttcgaaaatataaaa
ttcgaagacacatcggaagaggaacaaaaatatggagaagaaattatcaggaaggtattc
agagagagcaataagatgtgccttctggagtacaaggtaaaagatgtgtgtgatgtggaa
aagacaaaggaaaaaatcaaaacgattataaaaacgtcctattataactccaccagttgt
gataacttaatagaaaatatattagtgtggagagaaaaactagccaaaagaaatgacgaa
tctccggatagcataattaatatccacaccataatttctattattttaaatatgcctact
tcaatttcaagcttaaagaataatatcatccccatgtctaatcacatgtctgaaaatctg
gagaccctatttgagattattatcaaatcgaatatgaaaaaaaaaacgaatccacaattt
tatcgaaattttattcaaaatgagaagtccaacatttgtgattgcaccagtgaacaggaa
ttgaattccgtgcaacgccccttccctagggaggcacaaagaggcgtaggtggagatgat
gtggacgggacagacgaaacgaacggaatcctcattgtccccccgaggatgcactttcag
agcatttcggagggggcccaacgtgaggtgcatcctcccgacgatgaggaagacgctgct
gaggacggcggcggagatggcgttggtgatgatgttggcgatggtgttgtcaacgacgtt
ggcaacgacgttggcgatgacccttgctgtgccccacgtagcagatgcgacggacgcgat
aacgaacaggaggcgcgcgaagagggaggaacccccacagtcagtgcacctgatcagacc
tttaccctggagagaacattctttggcaacgacgaaagtgacgaggaggccagcaagaaa
cataaaaccctgggcagcaaaaatggaaaatatgaaaactacgctttgctgtcgtcccta
cttagctacgtcaaagagaagaaccaggaaatgtgtaaaacttctgagcatcctgagaag
gaaaaaaatgtgaagacggaaaaagagggagcacaaatgcagaagcagaggaccatttac
aaaagtgcgaaaaggcaactaccccacgacgttgctaacaacagttctggccaaaaaaaa
attaaacaaacacaacaccagtcgtacaaccagcagtataatataaagaacagaaaaggt
ctgtactccaaaaacattttaagcgaaatgaacaaaaagtggaatgtctaa
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