Pseudomonas chlororaphis PCL1606: PCL1606_04090
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Entry
PCL1606_04090 CDS
T03768
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCL1606_04090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcz03019
]
PCL1606_04090
Enzymes [BR:
pcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCL1606_04090
Messenger RNA biogenesis [BR:
pcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCL1606_04090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKA21864
UniProt:
A0A0D5XT53
LinkDB
All DBs
Position
complement(434729..436585)
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AA seq
618 aa
AA seq
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MSFASLGLSEALVGAIEAAGYTQPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMARGVDVLVACPGRLLDLAGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSKDITDLAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRALL
AHLITAGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGEV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIPDGDLQGFDASAVEAEKPEVRERPDVRNPRNARGARGDGASNGGGRKD
KGKDKGKDKPAARGERPAREQKPREGTPASQQRPPKPSPDRAPDEFLDDDVDNFGNRADY
VSPYQNKNNQGRGRRPGAPGQGAANGNAPRGGGQGRTGGGQRNGGGASNSGSQPAKRSGG
SRNGAARDGQGRREESRNRRPGRDDQARQEPAVQNTRSNQPKIMHKESKADRFPTPEQLD
QLPSRPRGEKPALLTRNR
NT seq
1857 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtcggcgccatcgaagccgccggc
tacacccagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctgatggtcgcggcacagacaggtactggtaaaaccggtggtttcgcccttccgatcctg
gagcggttgtttcccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccgacccgcgaactggccgcgcaagtgcatgacagcttcaag
ctgtatgcccgcgacctgaagttcgtcagcgcctgcatcttcggcggcgtcggcatgaac
ccgcaggtccaggccatggcccgtggcgtcgacgtgctggtggcctgccccggccgcctg
ctcgacctcgccggccagggtagcgtcgacttgtcccacgtggaaatcctcgtactggac
gaagccgaccgcatgctcgacatgggcttcgtccatgacgtgaagaaagtcctcgcccgc
ctgcccgccaagcgccagaacctgctgttttccgcgaccttctccaaggacatcacggac
ctggccggcaagctgctgcacaaccccgagcgcatcgaagtcacgccgccgaacaccacg
gtcgagcgcatcgagcaacgggtgttccgcctggccgccagccacaagcgtgcgctgctg
gcccacctgatcaccgccggcgcctgggaacaggtgctggtcttcacccggaccaagcac
ggcgccaaccgcctggccgagtacctggacaagcacggcctgaccgccgtcgcgatccac
ggcaacaagagccagaacgcccgcaccaaggccctggccgacttcaaggccggtgaagtg
cggatcctggtcgccaccgatatcgccgcccgcggcctggacatcgaccagctgccgcac
gtggtcaacttcgagctgccgaacgtcgacgaagactacgtgcaccggatcggccgcacc
ggtcgcgccggtcgttcgggcgaggcgatctcgctggtcgccccggatgaagagaagctg
ctcaaaagcatcgagcgcatgaccaagcagaagatccccgacggtgatctgcaaggtttc
gacgccagcgccgtggaagccgagaaaccggaagtgcgcgagcgtccggacgtgcgtaac
ccgcgcaacgcccgtggcgcgcgcggcgacggcgcgagcaacggcggtggccgcaaagac
aagggcaaggacaaaggcaaggacaagccggccgcccgcggcgagcgtccggcccgcgaa
cagaaacctcgcgaaggcaccccggccagccagcagcgcccgccgaagccaagcccggac
cgcgcccccgacgagttcctggacgacgatgtggataacttcggcaatcgcgccgactac
gtcagcccgtaccagaacaagaacaaccagggccgcggccgccgtcctggcgcgccaggc
cagggcgcagccaacggcaatgcgccacgcggcggcggccagggtcgcactggcggcggt
caacgcaacggtggcggcgccagcaactccggcagccagccggccaagcgcagcggtggc
tcgcgcaacggtgccgcgcgtgatggccagggacgtcgcgaagaatcgcgtaaccgtcgc
cccggtcgtgatgaccaggcgcgccaggagcccgcggtccagaacacccgcagcaaccag
ccgaagatcatgcacaaggagtcgaaagccgaccgcttcccgacacccgagcagctcgat
caactgccaagccgcccacgcggcgaaaaaccggccttgctgacccgcaatcgctga
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