Pseudomonas chlororaphis PCL1606: PCL1606_07110
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Entry
PCL1606_07110 CDS
T03768
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PCL1606_07110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcz03021
]
PCL1606_07110
03400 DNA repair and recombination proteins [BR:
pcz03400
]
PCL1606_07110
Enzymes [BR:
pcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PCL1606_07110
Transcription machinery [BR:
pcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PCL1606_07110
DNA repair and recombination proteins [BR:
pcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PCL1606_07110
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
AMIN-like
Motif
Other DBs
NCBI-ProteinID:
AKA22166
LinkDB
All DBs
Position
735661..736662
Genome browser
AA seq
333 aa
AA seq
DB search
MQISVNEFLTPRHIDVQVVSPTRAKITLEPLERGFGHTLGNALRRILLSSMPGCAVVEAE
IDGVLHEYSAIEGVQEDVIEILLNLKGLAIKLHGRDEVTLTLSKKGSGVVTAADIQLDHD
VEIVNPDHVIANLASNGALNMKLVVARGRGYEPADSRQSDEDESRSIGRLQLDSSFSPVR
RIAYVVENARVEQRTNLDKLVIDLETNGTLDPEEAIRRAATILQQQLAAFVDLKGDSEPV
VIEQEDEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLDNWPPASLKKDDKATA
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atgcagatttcggtaaatgagttcctgacacctcgccatattgatgtgcaggttgtcagt
ccaacccgcgccaagatcaccctcgagcctctcgagcgtggttttggccacaccctgggc
aacgcgctgcgccgcatcctgttgtcctcaatgcccggctgtgcagtagtcgaggccgag
attgacggtgtgctccacgagtacagcgccatcgaaggtgtacaggaagacgtaattgaa
atcctgttgaaccttaaaggtctggctatcaagctgcacggccgtgacgaagttacgctg
accttgtcgaagaagggttcgggggtggttaccgctgccgatattcagctggatcatgat
gtcgagatcgttaaccccgatcacgtaatcgctaacctggcgtctaacggcgccctgaac
atgaagctcgtagtagctcgtggtcgtggttatgaaccggcagactcgcgtcagagcgat
gaagacgaaagccgcagcatcggtcgcttgcagctcgactcttcgttcagcccggttcgc
cgtatcgcatacgtggtggaaaacgcccgtgtcgagcagcgtaccaacctggacaagctg
gttattgatctggaaaccaacggtaccctggatcctgaagaggctatccgccgtgctgca
accatcctgcaacagcagttggctgcgttcgtcgacctcaagggtgacagtgagcctgtg
gtaatcgagcaggaagacgagatcgatccgatcctgcttcgcccggttgacgatctggaa
ctgactgtacgttcggctaactgccttaaggcggaaaacatttactacatcggcgacctg
attcagcgtaccgaagtagaactgttgaagactccgaacctgggcaagaaatccttgacc
gaaatcaaggatgttctggcctcccgcggtctgtccctcggcatgcgcctcgacaactgg
ccgcctgcaagtcttaagaaggacgacaaggcgactgcctga
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