Pseudomonas chlororaphis PCL1606: PCL1606_08610
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Entry
PCL1606_08610 CDS
T03768
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCL1606_08610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcz03019
]
PCL1606_08610
Enzymes [BR:
pcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCL1606_08610
Messenger RNA biogenesis [BR:
pcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCL1606_08610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKA22316
UniProt:
A0A0D5XTB4
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All DBs
Position
887658..888992
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AA seq
444 aa
AA seq
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MTFATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLGGRDLMAAAQTGTGKTAGFALPLL
QSLTMEGPKVASNSVRALILVPTRELAEQVHESVRQYAEHLPLSTYAVYGGVSINPQMMK
LRKGIDLLVATPGRLLDLYRQNAVKFGQLQTLVLDEADRMLDLGFSEELKDIYAALPKKR
QTLLFSATFSDAIRLLAGQMLNDPLSIEVSPRNVAASTVKQWIVTVDKKRKPELFSHLLR
KHRWKQVLVFAKTRNGVDALVERLQGQGVNADGIHGDKPQATRQRALDRFKASEIQILVA
TDVAARGLDIEDLPLVVNFDLPIVAEDYVHRIGRTGRAGASGEAISLVCADEVNLLSAIE
VLTRQTLKRHDEPDFIPDHRVPETDASGQVVKKPKKPKKPKTSGGGGKRNLGKWVDSGEV
AEAPAVKPVRKVPAFNTGPRKRKP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacattcgccactcttggcctgatcgaacccttgctgcgcgccctcgaaacgcttggc
taccagaccccgacaccggtgcaggcgcaagccatcccggcggtgctgggcggtcgcgac
ctgatggccgcggcgcagaccggcaccggcaagaccgccggcttcgccttgccgctcctg
caatcgctgacgatggaagggccgaaagtggccagcaactcggtgcgcgcgctgatcctg
gtgccgacgcgcgagctggccgagcaggttcacgaaagcgtgcgccagtacgccgaacac
ctgccgctgagcacttacgcggtgtacggcggcgtcagcatcaacccgcagatgatgaag
ctgcgcaagggcatcgacctgctggtggcgacaccggggcgcctgctcgacctgtaccgg
cagaacgcggtgaagttcggccagttgcagaccctggtgctggacgaagccgaccgcatg
ctcgacctgggcttctccgaagagctgaaggacatctacgcggcgctgccgaaaaagcgc
cagaccctgctgttctccgcgactttctccgacgccatccgcctgctggccgggcagatg
ctcaacgacccgctgagcatcgaagtcagcccgcgcaacgtcgccgccagcaccgtcaag
cagtggatagtgacggtggacaagaagcgcaagccggagctgttcagccacctgctgcgc
aagcaccgctggaagcaggtgctggtgttcgccaagacccgcaacggcgtggacgcgctg
gtggagcgcctgcaaggccagggcgtgaatgccgatggcatccatggcgacaagccccag
gccacccgtcagcgcgcgctcgaccggttcaaggccagcgagatccagatcctggtggcc
accgacgtggcggcccgtggcctggacatcgaagacctgccgctggtggtcaacttcgac
ctgccgatcgtcgccgaggattacgtccaccggatcggtcgcaccggccgcgccggggcc
agcggcgaggcgatctcgctggtgtgcgccgatgaggtgaacctgttgtcggccatcgag
gtgctgacccgccagacgctgaagcggcacgacgagccggacttcatcccggaccaccgc
gtgccggagaccgacgcgagcggccaggtggtcaagaagccgaaaaaaccgaagaaaccc
aagacttccggcggtggcggcaagcgcaacctgggcaagtgggtggacagcggcgaagtg
gccgaggccccggcggtcaagccggtgcgcaaggtcccggccttcaacaccggcccgcga
aagcgcaagccgtaa
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