Pseudomonas chlororaphis PCL1606: PCL1606_15920
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Entry
PCL1606_15920 CDS
T03768
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PCL1606_15920
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcz03021
]
PCL1606_15920
Transcription machinery [BR:
pcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCL1606_15920
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
HTH_23
Sigma70_r4
GerE
HTH_31
Sigma70_ECF
HTH_24
DUF7123
DUF2774
HTH_3
HTH_Tnp_4
HTH_28
HTH_10
DUF6362
HTH_11
Xre-like-HTH
Terminase_5
HTH_5
HTH_40
Motif
Other DBs
NCBI-ProteinID:
AKA23047
LinkDB
All DBs
Position
1646458..1646979
Genome browser
AA seq
173 aa
AA seq
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MSGADTTHSDYVGSLFRSHYVWLCGRLRGHLHASSEAGASAEDIAADTFVQLLSRPEVAP
IRQPRALLTTISQRLMYQLWRRRDLERAYLDALQHEADSVPPSPQDLAQMLEALEAIDRL
LDGLPAKVKATFLLSQVNGLTYPQIAEQLGISQRSVSDYMTRVAQRCLRLDLD
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcgccgacacgactcacagcgactatgtgggcagcttgttccgcagtcattac
gtctggctgtgcggccgcctgcgcggtcacctgcacgcctcttcggaggctggcgccagc
gccgaggacatcgccgccgacaccttcgtccagttgctgagcaggcccgaggtggcgccg
atccgccagccgcgggccttgctgacgaccatttcgcaacgcctgatgtaccagctgtgg
cgccggcgcgacctggagcgcgcctacctcgatgccttgcagcacgaggccgacagcgtg
ccgccgtcgccccaggacctggcgcagatgctcgaggcgctggaagccatcgaccgcctg
ctcgacggcctgccggccaaggtcaaggcgaccttcctgctgtcccaggtcaatggcctg
acctacccgcagatcgccgagcaattggggatctcgcaacgttcggtcagcgactacatg
acccgggtcgcccagcgttgcctgcgcctggacctggactga
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