KEGG   Pseudomonas chlororaphis PCL1606: PCL1606_15920
Entry
PCL1606_15920     CDS       T03768                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcz  Pseudomonas chlororaphis PCL1606
Pathway
pcz02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pcz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PCL1606_15920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcz03021]
    PCL1606_15920
Transcription machinery [BR:pcz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PCL1606_15920
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 HTH_23 Sigma70_r4 GerE HTH_31 Sigma70_ECF HTH_24 DUF7123 DUF2774 HTH_3 HTH_Tnp_4 HTH_28 HTH_10 DUF6362 HTH_11 Xre-like-HTH Terminase_5 HTH_5 HTH_40
Other DBs
NCBI-ProteinID: AKA23047
LinkDB
Position
1646458..1646979
AA seq 173 aa
MSGADTTHSDYVGSLFRSHYVWLCGRLRGHLHASSEAGASAEDIAADTFVQLLSRPEVAP
IRQPRALLTTISQRLMYQLWRRRDLERAYLDALQHEADSVPPSPQDLAQMLEALEAIDRL
LDGLPAKVKATFLLSQVNGLTYPQIAEQLGISQRSVSDYMTRVAQRCLRLDLD
NT seq 522 nt   +upstreamnt  +downstreamnt
atgtccggcgccgacacgactcacagcgactatgtgggcagcttgttccgcagtcattac
gtctggctgtgcggccgcctgcgcggtcacctgcacgcctcttcggaggctggcgccagc
gccgaggacatcgccgccgacaccttcgtccagttgctgagcaggcccgaggtggcgccg
atccgccagccgcgggccttgctgacgaccatttcgcaacgcctgatgtaccagctgtgg
cgccggcgcgacctggagcgcgcctacctcgatgccttgcagcacgaggccgacagcgtg
ccgccgtcgccccaggacctggcgcagatgctcgaggcgctggaagccatcgaccgcctg
ctcgacggcctgccggccaaggtcaaggcgaccttcctgctgtcccaggtcaatggcctg
acctacccgcagatcgccgagcaattggggatctcgcaacgttcggtcagcgactacatg
acccgggtcgcccagcgttgcctgcgcctggacctggactga

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