Pseudomonas chlororaphis PCL1606: PCL1606_19250
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Entry
PCL1606_19250 CDS
T03768
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCL1606_19250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcz03019
]
PCL1606_19250
03009 Ribosome biogenesis [BR:
pcz03009
]
PCL1606_19250
Enzymes [BR:
pcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PCL1606_19250
Messenger RNA biogenesis [BR:
pcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCL1606_19250
Ribosome biogenesis [BR:
pcz03009
]
Prokaryotic type
rRNA helicases
PCL1606_19250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
AKA23380
UniProt:
A0A0D5XX19
LinkDB
All DBs
Position
1995124..1996794
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AA seq
556 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPES
RQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLAPLVAEAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALNLAAIEKERPLVPNSTPRGDRPERGDRPDRGDRERRAPMPLAEGRA
RCRTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLAKLKD
TRVAGKQLKLRRYRED
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctcttgaacttcatcccaatattgtcgctgca
gtagtcgctaccggctatgaagagccttcggccattcagcagcagtcgatcccgatcatc
ctcgccggtcacgatatgattggccaggcgcaaaccggtaccggtaagaccgccgcgttc
gccctgcctatcctgcaccgcatcgatccgtccaagcgcgagccgcaagctctgatcctg
gccccaacccgtgagttggcgctgcaagttgcaaccgctttcgaaacctacgccaagcag
atgccgggcgtaactgttgtggctgtctacggcggcgcgccgatgggcccacaactgaaa
gcaatccggaatggtgcacagatcgttgtcgccactccgggccgtctgtgcgaccacctg
cgtcgcgacgaaaaagtcctggcgaccgtgaaccacctggttctcgacgaagccgacgaa
atgctcaagctgggcttcatggatgacctggaagtgatcttcaaggccatgccggagtcc
cgccagaccgtcctgttctcggccaccctgccgcagtcgatccgcgcgatcgccgagcgt
cacctgaaggacccgaaacacgtcaagatccagagcaagacccagaccgtcaccgcgatc
gagcaggctcacctgctggttcacgccgaccagaagacttccgccgtgctcagcctgctg
gaagtggaagacttcgacgccctgatcatgttcgtgcgcaccaagcaagcgaccctggac
ctggccagtgccctggaagccaaaggctacaaagccgctgcgctgaacggcgacatcgcc
cagaaccagcgtgagcgtgtgatcgactccctcaaggatggccgcctggacatcgttgtg
gcgaccgacgtggccgcccgtggcctggacgtaccgcgcatcacccacgtattcaacgtg
gacatgccgtacgacccggaatcctacgtgcaccgtatcggccgtaccggccgtgccggt
cgcgaaggtcgcgcgctgctgctggtgactccgcgtgagcgccgcatgctgcaagtgatc
gagcgtgtgactgggcagaaggtggccgaggttcgcctgccggacgcccaggccgttctc
gatgcgcgcatcaagaagctgaccaacagcctggcgccgctggttgccgaagccgaatcg
acccacggtgacctgttggatcgcctgaccgccgatatcggttgcagcccgcgcgccctg
gccgcggccctgctgcgcaaggccaccaacggccaggcgctgaacctggcagcgatcgag
aaggagcgtccgctggtgccgaacagcaccccgcgtggcgaccgtcctgagcgtggcgat
cgtccggatcgcggtgatcgcgagcgtcgtgcaccgatgcctctggccgaaggccgtgcc
cgttgccgtaccgcgctgggcgcgcgtgacggtatcgcggcgaagaacctgctgggcgcc
atcctcaacgaaggcggcctggcccgcgaagccatcggtcgcatccaggtgcgcgacagc
ttcagcctggtagagctgccggaggaaggcctggagcgtctgctggccaagctgaaggac
actcgcgttgccggcaagcagctgaaactgcgtcgttatcgcgaagactga
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