Pseudomonas chlororaphis PCL1606: PCL1606_28410
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Entry
PCL1606_28410 CDS
T03768
Name
(GenBank) ATP-dependent DNA helicase
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PCL1606_28410
09124 Replication and repair
03420 Nucleotide excision repair
PCL1606_28410
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcz03021
]
PCL1606_28410
03036 Chromosome and associated proteins [BR:
pcz03036
]
PCL1606_28410
03400 DNA repair and recombination proteins [BR:
pcz03400
]
PCL1606_28410
Enzymes [BR:
pcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PCL1606_28410
Transcription machinery [BR:
pcz03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PCL1606_28410
Chromosome and associated proteins [BR:
pcz03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PCL1606_28410
DNA repair and recombination proteins [BR:
pcz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PCL1606_28410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
PDDEXK_1
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AKA24292
UniProt:
A0A0D5XZX1
LinkDB
All DBs
Position
3081958..3084246
Genome browser
AA seq
762 aa
AA seq
DB search
MNYRIAVRALCEFTAKAGDLDLRFTPSPTALEGIQGHRTVAARRSANYQREVALEGSFGA
LTVRGRADGYDPDANLLEEVKTYRGDLERMPANHRQLHWAQAKVYGWLLCQQLQLRRIRL
ALVYFDIQSERETSLLEEHDAQALEQFFNRQCRLFLQWAEQELAHRTARDRAMAALGFPH
PDFRPGQRTLAESVYKAVSTGRCLMAQAPTGIGKTLGTVFPMLKAMPGQQLDKLFFLTAK
TPGRQLALDSARLLFERNPGLPLRVLELVARDKACEHPELACHGESCPLAKGFYERLPAA
RQAASQLPLLDQRALREVALAHGLCPYYLSQEMARWSDLVVADYNYYFDFSALLFGLAQL
NQWKVAALVDEAHNLVERGRAMYSASLDQYQLGSVRQTAPPALKTPLQRLNREWNALHKE
QQRPYQAHDQLPAPLLKALALCIAAIGDYLNDHPQGLDSGLQGFYFDALQFVRVAELFDE
QFLFDISKRELNARRSLSTLCLRNVVPAGFLGPRLSAARSTVLFSATLNPWHYYRDLLGL
PDNAVWVEVESPFHAAQLEVQLVSRISTRFTHRQASLAPIVELIASQFHRRPGNYLAFFS
SFDYLQQVASLLAQRHPQIPMWQQSRGMDEGQRQAFLQRFDADGQGVGFAVLGGAFGEGI
DLPGSRLIGAFIATLGLAQLNPVNEQLKQRMAAIFGAGYDYTYLYPGLQKVVQAAGRVIR
SQHDRGVVMLIDDRFAEPRVRQLLPRWWSLDAPGGEAVQGAG
NT seq
2289 nt
NT seq
+upstream
nt +downstream
nt
gtgaactaccgcatcgcggtacgggcgctgtgcgagttcaccgccaaggccggtgacctc
gacctgcgcttcaccccgtcgccgaccgcgctggaaggcatccagggccatcgcacggtc
gcggcgcggcgcagcgcgaactatcagcgcgaggtcgccctcgagggcagcttcggcgcc
ttgacggtcaggggcagggcggacggctacgacccggacgccaacctgctggaagaggtc
aagacctaccgtggcgacctcgagcgcatgccggccaaccatcgccagctgcattgggcc
caggccaaggtctacggctggctgctgtgccagcagttgcaactgcgccgcatccgcctg
gcgctggtgtatttcgacatccagagcgagcgcgagacgtccttgctggaggagcacgac
gcccaggccctggagcagttcttcaaccgccagtgccgcctgttcctgcaatgggccgaa
caggagctggcccatcgcaccgcgcgtgaccgggcgatggcggccctgggcttcccgcac
cccgacttccgccccgggcaacgcacgctggccgagtcggtgtacaaggcggtgagcacc
ggccgctgcctgatggctcaggcgccgacgggtatcggcaagaccctggggacggtgttc
ccgatgctcaaggccatgcccgggcagcaactggacaagctgttcttcctcaccgccaag
acgccgggtcgccaattggcgctggacagcgcccggctgttgttcgagcgcaaccccggg
ctgccgttgcgggtactggaactggtggcccgggacaaggcctgcgagcacccggagttg
gcctgccatggcgagtcctgcccgttggccaagggtttctacgagcgcctgccggcggcg
cggcaggcggccagccagctgccgctgctggaccagcgggcgctgcgcgaggtcgccctg
gcgcatgggctgtgcccctattacctgagccaggaaatggcccgctggagcgacctggtg
gtggcggactacaactactacttcgatttcagcgccttgttgttcggcctggcgcagctc
aaccagtggaaggtcgcggcgctggtggacgaagcccacaacttggtggagcgcgggcgc
gcgatgtacagcgcgagcctcgaccagtaccagctcggcagcgtgcgccagactgctccg
ccggcgctgaagacgcccctgcaacggctcaaccgcgaatggaatgcgctgcataaggag
cagcagcggccctatcaggcccatgaccagctccccgcgccgctgctcaaggcgctggcg
ctgtgcattgcggcgatcggcgactacctcaacgaccaccctcaggggctggacagcggc
ttgcagggcttctatttcgacgcgctgcaatttgtccgggtggccgaactgttcgacgag
cagttcctgttcgatatcagcaagcgcgagctcaatgcccggcgcagcctgtccaccctg
tgcctgcgcaacgtggtgccggccgggttcctcgggccgcggctgagtgctgcgcgcagc
acggtgctgttctcggcgaccctgaacccctggcattactaccgcgatctgctggggctg
ccggacaacgcggtgtgggtggaggtggagtcgccgtttcacgccgcgcagctggaggtg
cagctggtcagccggatctccacgcgtttcacccatcgccaggcgtcgctggcgccgatc
gtcgagctgatcgccagccagttccaccggcgcccgggcaattacctggcgtttttcagc
agcttcgattacctgcagcaggtggccagcctgctggcgcagcggcatccgcagatcccg
atgtggcaacaatcgcgggggatggacgaggggcagcgccaggcgtttctccaacgtttc
gacgccgatggccagggcgtggggttcgcggtgctcggcggggccttcggcgagggcatc
gacctgccggggtcgcggttgatcggggcctttatcgccaccctgggcctggcccagctg
aacccggtgaacgagcagctgaaacagcgcatggcggcaatttttggcgccggctacgac
tacacctacctgtatcccggcctgcaaaaggtggtgcaggccgccggccgggtgatccgc
agccagcacgaccgcggcgtggtgatgctgatcgacgaccgcttcgccgagccccgggtc
cggcaattgctgccgcgctggtggtcgctcgacgcacccggcggcgaggcggttcaaggc
gccgggtag
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integrated database retrieval system
