KEGG   Pseudomonas chlororaphis PCL1606: PCL1606_28790
Entry
PCL1606_28790     CDS       T03768                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcz  Pseudomonas chlororaphis PCL1606
Pathway
pcz02020  Two-component system
Brite
KEGG Orthology (KO) [BR:pcz00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    PCL1606_28790
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pcz03021]
    PCL1606_28790
Transcription machinery [BR:pcz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     PCL1606_28790
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 Sigma70_ECF PhyR_sigma-like HTH_23 GerE RovC_DNA-bd HTH_11 HTH_28 HTH_24 HTH_31 MA3 HTH_29 HTH_38 Sigma70_r3 DUF6362
Other DBs
NCBI-ProteinID: AKA24330
LinkDB
Position
3129367..3129786
AA seq 139 aa
MGNAWDAADLSQDTFLRVLTSSQQLVDLREPRAYLVTVGKRLLSNFHTRRKLEQAYLNAL
ASLPEDSVPSPEQRWVLLETLQALDELLDGLPPVVRRAFLWSQLEGLGYREIAERLDVSE
RSVKRYMAQAYEHCLLVEL
NT seq 420 nt   +upstreamnt  +downstreamnt
atgggcaacgcctgggatgcggcggacctgagccaggacaccttcctgcgcgtgctgacc
agctcccagcaactggtcgacctgcgcgagccgcgggcttacctggtgaccgtgggcaag
cgcctgctgagcaacttccacacccgccgcaagctggaacaggcctacctgaatgcgctg
gccagcctgccggaagacagcgtgccgtcgccggagcagcgctgggtgctgctggaaacc
ctgcaagccctggacgaactgctcgacggcctgccgccggtggtgcgccgggcgtttctc
tggagccagctcgaaggcctgggctatcgcgagatcgccgagcgcctcgacgtctcggaa
cgcagcgtcaagcgctacatggcccaggcctacgagcactgtctgctggtggagctgtga

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