Pseudomonas chlororaphis PCL1606: PCL1606_28790
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Entry
PCL1606_28790 CDS
T03768
Name
(GenBank) RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
PCL1606_28790
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pcz03021
]
PCL1606_28790
Transcription machinery [BR:
pcz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
PCL1606_28790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
PhyR_sigma-like
HTH_23
GerE
RovC_DNA-bd
HTH_11
HTH_28
HTH_24
HTH_31
MA3
HTH_29
HTH_38
Sigma70_r3
DUF6362
Motif
Other DBs
NCBI-ProteinID:
AKA24330
LinkDB
All DBs
Position
3129367..3129786
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AA seq
139 aa
AA seq
DB search
MGNAWDAADLSQDTFLRVLTSSQQLVDLREPRAYLVTVGKRLLSNFHTRRKLEQAYLNAL
ASLPEDSVPSPEQRWVLLETLQALDELLDGLPPVVRRAFLWSQLEGLGYREIAERLDVSE
RSVKRYMAQAYEHCLLVEL
NT seq
420 nt
NT seq
+upstream
nt +downstream
nt
atgggcaacgcctgggatgcggcggacctgagccaggacaccttcctgcgcgtgctgacc
agctcccagcaactggtcgacctgcgcgagccgcgggcttacctggtgaccgtgggcaag
cgcctgctgagcaacttccacacccgccgcaagctggaacaggcctacctgaatgcgctg
gccagcctgccggaagacagcgtgccgtcgccggagcagcgctgggtgctgctggaaacc
ctgcaagccctggacgaactgctcgacggcctgccgccggtggtgcgccgggcgtttctc
tggagccagctcgaaggcctgggctatcgcgagatcgccgagcgcctcgacgtctcggaa
cgcagcgtcaagcgctacatggcccaggcctacgagcactgtctgctggtggagctgtga
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