Pseudomonas chlororaphis PCL1606: PCL1606_30410
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Entry
PCL1606_30410 CDS
T03768
Name
(GenBank) transcriptional regulator
KO
K18294
TetR/AcrR family transcriptional regulator, mexCD-oprJ operon repressor
Organism
pcz
Pseudomonas chlororaphis PCL1606
Module
pcz_M00639
Multidrug resistance, efflux pump MexCD-OprJ
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pcz03000
]
PCL1606_30410
09183 Protein families: signaling and cellular processes
01504 Antimicrobial resistance genes [BR:
pcz01504
]
PCL1606_30410
Transcription factors [BR:
pcz03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
PCL1606_30410
Antimicrobial resistance genes [BR:
pcz01504
]
Gene sets
Multipdrug resistance modules
Multidrug resistance, efflux pump MexCD-OprJ [MD:
M00639
]
PCL1606_30410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HTH_IclR
TetR_N
LacI
MerR
HTH_24
HTH_31
TetR_C_29
Xre-like-HTH
SpoIIID
HTH_11
MarR_2
HTH_17
HTH_AsnC-type
HTH_26
HTH_3
HTH_10
HHH
HTH_6
Motif
Other DBs
NCBI-ProteinID:
AKA24492
UniProt:
A0A0D5Y0G7
LinkDB
All DBs
Position
3317688..3318374
Genome browser
AA seq
228 aa
AA seq
DB search
MTHLSSICNISETWTVARNNIRPRLAMNPNSHDELLLKTLTMAVVHRPRATMKELAQLAG
VSKATLHRYCGTRENLGKRLEVYAKGVLSRVISNAGLQSAEPLEALRRLIREHLAHRELL
AFLLAQYRPDFLDFERSDVRWQSYIETLDAFFLRGQQQGVFRIDITAAIFTELFITLVYG
IVDAEQRGRAANANSAGTVEQMFLHGALRPRASSEPSRTLEAPALRNE
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgactcatttgagttctatttgtaatatttcagaaacctggacagtggcccgcaataac
atccgcccgaggcttgcgatgaaccccaattcccatgacgaactcctgctcaagacgctg
accatggccgtcgtccatcggccgcgcgccaccatgaaggagctggcgcaactggcaggg
gtaagcaaggcgacgctgcaccgctactgcggcacgcgggaaaacctggggaaacgcctg
gaggtgtatgccaagggcgtactcagccgcgtcatcagcaacgccggactacagagcgca
gagccgctggaggcgttgcgtaggttgatcagggaacacctcgcccatcgcgagctgctg
gccttcctgctggcgcagtatcgacccgacttcctcgacttcgagcgcagtgacgtgcgt
tggcagtcttatatcgagacgctggatgcgtttttcctgcgcggccagcaacaaggcgtg
tttcgcatcgacattaccgcggcgattttcaccgagctgttcatcaccctggtctacggg
atagtcgacgccgaacagcgcgggcgggccgccaatgccaattcggcaggcaccgtggaa
cagatgttcttgcatggggcgctgcgcccccgtgcctccagcgagccttcgcgcacgctg
gaggcgccagccctcagaaatgagtga
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integrated database retrieval system
