Pseudomonas chlororaphis PCL1606: PCL1606_38480
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Entry
PCL1606_38480 CDS
T03768
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pcz03016
]
PCL1606_38480
Enzymes [BR:
pcz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
PCL1606_38480
Transfer RNA biogenesis [BR:
pcz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
PCL1606_38480
Prokaryotic type
tRNA splicing ligases
PCL1606_38480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKA25299
UniProt:
A0A0D5Y2U4
LinkDB
All DBs
Position
complement(4219979..4221205)
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AA seq
408 aa
AA seq
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MEHKTWQLLEVANGKPIKMWTQGVPVENEARQQLMNTAKMPFIFKHLAVMPDVHLGKGST
IGSVIPTLGAIIPAAVGVDIGCGMIAARTSLTAADLPDNLHGLRCAIESAVPHGRTAPRS
GRDKGAWGEVPQQADRAWATLHPRFKAITDKYPALAKSNNRQHLGTLGGGNHFIEVCLDE
ANRVWFMLHSGSRGVGKAIGNLFIQLAQADMRQHIADLPHRDLAYFKEGSRHFDDYVEAV
GWAQDFARQNRELMMQAVIQATRQVIRKPFEVALEAVNCHHNYVQKERHFGAEVLVTRKG
AVSAQKGELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRTMSRTKAKDTFTLADQIRA
TAHVECRKDEAVIDEIPMAYKDIDQVMHAQRELVEVLHTLRQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggaacacaagacctggcaactgctggaagtcgccaacggcaagccgatcaagatgtgg
acccagggcgtgcccgtggaaaacgaagcccgccagcagttgatgaataccgcgaagatg
ccgttcatcttcaagcacctggcggtgatgcccgacgtgcacctgggcaagggttcgacc
atcggcagcgtgatcccgaccctgggcgcgatcattcccgcggccgtcggcgtggatatc
ggctgcggcatgatcgccgcccgcacctcgctgacggcggcggacctgccggacaacctg
cacggcctgcgctgcgccattgaaagtgccgtgccccatgggcgtaccgcgccgcgcagc
ggccgcgacaagggcgcctggggcgaggtgccgcagcaggccgaccgggcctgggcgacc
ttgcatccgcgcttcaaggcgatcaccgacaagtacccggcgctggccaagagcaacaac
cgccagcacctgggaacgctcggtggcggcaaccacttcatcgaagtctgcctggatgaa
gccaaccgggtctggttcatgctgcacagcggttcccgtggcgtgggtaaagcgatcggc
aacctattcatccagctggcccaggcggatatgcgccagcacatcgccgatctgccacac
cgggatctggcgtatttcaaggaaggcagccggcacttcgacgattacgtcgaagccgtg
ggctgggcccaggacttcgcccggcagaaccgcgagttgatgatgcaggcggtgatccag
gccacccgccaggtgatccgcaaacccttcgaggtggcgctggaggcggtgaactgccac
cacaactacgtgcagaaggagcgtcatttcggtgcggaggtgctggtgacccgcaagggc
gcggtgtcggcgcaaaagggcgagctggggatcatcccggggtcgatgggggccaagagc
ttcatcgtccgcggcctgggcaacgaggaggcgttctgctcctgcagccatggggccggg
cgcaccatgagccgcaccaaggccaaggacaccttcaccctggccgaccagatccgcgcc
accgcccatgtggaatgccgcaaggacgaagcggtgatcgatgaaatcccgatggcctac
aaggacatcgaccaagtcatgcacgcccagcgcgagctggtggaagtgctgcacaccctg
cgtcaggtagtgtgcgtaaaggggtag
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