Pseudomonas chlororaphis PCL1606: PCL1606_40810
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Entry
PCL1606_40810 CDS
T03768
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
PCL1606_40810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pcz03400
]
PCL1606_40810
Enzymes [BR:
pcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCL1606_40810
DNA repair and recombination proteins [BR:
pcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
PCL1606_40810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
Cas3-like_C_2
ERCC3_RAD25_C
AroM
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AKA25530
UniProt:
A0A0D5Y399
LinkDB
All DBs
Position
4471368..4474817
Genome browser
AA seq
1149 aa
AA seq
DB search
MPVLRLPQLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSF
FAPDLPVLHFPDWETLPYDLFSPHQDIISQRIASLYRLPELGHGVLVVPITTALHRLAPT
QYLLGSSLVLDVGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPY
RIDLFDDEIETLRTFDPENQRSIDKVDSVRLLPAKEFPLQKEAITRFKARFRERFDVDFR
RCPIFQDLSSGITPAGIEYYLPLFFENTSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRN
RYEERRVDPSRPLLPPAELFLPVEDCFARLKSWPRVVASQQDIEAGAGRERFPAQPLPNL
AIEAKANQPLAALANFLEQFSGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDFVAS
KERLAITIAPLDEGLQLDDPALALVAESPLFGQRVMQRRRREKRADANNDAVIKNLTELR
EGAPVVHIDHGVGRYLGLSILEIDNQAAEFLTLEYAEGAKLYVPVANLHLIARYTGSDDA
LAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSAGFP
FEETPDQQTTIEAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPT
TLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVADLAEGKIDIVIGTHKLLQDDV
KIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIAT
PPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARI
GIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQ
LRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGEL
LGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLP
DVHARLILYKRIASATDEDGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKV
DGGPQGGRIEFAADTPVDPLALIKLIQGQPNRYKFEGATLFKFMVPMERPEERFNTLEAL
FERLTPKTA
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgttctgcgtctaccgcaactccctgccgccgccggcaaacagcactggggcaac
ctgcccggtgccgccctcagcctggccatcgccgaggctgccagcgccgccaagcgcttc
accctgctgctgaccgccgacagccaaagtgccgaacggctggaacaggagctgagtttc
ttcgccccggatttgcccgtgctgcatttcccggactgggaaaccctgccctacgatctg
ttctcgccgcaccaggacatcatttcccagcgcatcgccagcctgtaccggctgccggag
ctggggcacggcgtgctggtggtgccgatcaccaccgccctgcaccgcctggcaccgacc
caatatctgctgggcagcagcctggtgctggacgtcggccagaagctcgatgtcgagcag
atgcgcacccgcctggaagccagcggctatcgctgcgtcgacacggtctacgagcacggc
gaattcgccgtgcgcggggccctgatcgacctgttcccgatgggcagcaaactgccttat
cgcatcgacctgttcgacgatgaaatcgagaccctgcgcaccttcgatccggaaaaccag
cgctcgatcgacaaggtcgattcggtacgcctgctgccggccaaggaattcccgctgcag
aaagaggccatcacccgcttcaaggcgcgttttcgcgaacgcttcgatgtcgacttccgc
cgctgcccgatcttccaggacctgagcagcgggatcactccagccggcatcgagtactac
ctgccgctgttcttcgagaacacctcgaccctgttcgactacctgccccaggacacccag
gtgttctcgctgccgggcatcgagcaggcggccgagaacttctggaacgatgtgcgcaac
cgctatgaagaacgtcgcgtcgatccgtcccgccctttattgccaccggccgaattgttc
ctgccggtggaagactgcttcgcccgcctgaaaagctggccacgagtggtcgccagccag
caggacatcgaggccggcgccggccgcgagcgcttcccggcgcagccgctgcccaacctt
gccatcgaagccaaggccaaccagccgctggcggccctggcgaatttcctcgagcagttc
tccggacgcgtgctgttcaccgccgagtccgcggggcggcgcgaggtgctgctggaattg
ctcgaacgcctgaagctgcggccgaagaccgtcgacagctggccggatttcgtcgcgagc
aaggaacgcctggcaatcaccatcgcgccactggacgaaggcttgcagctggacgatccg
gcgctggcactggtggccgaaagcccgttgttcggccagcgcgtgatgcagcgccggcgc
cgggagaagcgcgccgacgccaacaacgacgcggtgatcaagaaccttaccgagctgcgc
gagggcgcgccggtggtgcatatcgatcacggcgtggggcgttatctggggctgtcgatc
ctggagatcgacaaccaggccgccgaattcctcaccctcgaatatgccgagggcgccaag
ctctatgtgcccgtggccaacctgcacctgatcgcccgctacaccggcagcgacgacgcc
ctcgccccattgcaccgcctgggttccgaagcctggcagaaagccaagcgcaaggccgcc
gaacaggtacgcgatgtcgccgccgaactgctggacatctatgcgcgccgcgccgcccgc
gaagggtatgccttcgccgatccgaaagccgattacgccaccttcagcgccggcttcccg
ttcgaagaaaccccggaccagcagaccaccatcgaagcggtgcgcgaggacatgctcgcg
gccaagccgatggatcgcctggtctgcggcgacgtcggcttcggcaagaccgaagtggcg
atgcgcgccgccttcatcgcggtgcacggcggcaagcaggtagcgatcctggtgcccacc
accctgctcgcccagcagcactacaacagcttccgcgaccgcttcgccgattggccggtg
accgtggaagtaatgagccgcttcaagtccgccaaggaagtgaacgccgcggtggccgac
ctggccgaaggcaagatcgacatcgtcatcggcacccacaagctgttgcaggacgatgtg
aagatcaagaacctgggcctggtgatcatcgacgaagaacaccgcttcggcgtgcgccag
aaagaacagctcaaggccctgcgcagcgaggtcgacatcctgaccctgaccgccacgccg
attccgcgcacgctgaacatggcggtgtcgggcatgcgcgacctgtcgatcatcgccacg
ccgccggcccggcgcctgtcggtgcgcaccttcgtcatggagcagaacaagagcacggtc
aaggaggcgctgctgcgcgagctgctgcgcggcggccaggtgtattacctgcacaacgat
gtgaagaccatcgagaaatgcgccgccgacctcgccgaactggtgcccgaagcccgcatc
ggcatcggccacgggcagatgcgcgaacgcgaactcgaacaggtgatgagcgacttctac
cacaagcgcttcaacgtgctgatcgcctcgaccatcatcgagaccgggatcgacgtgcca
agcgccaacaccatcatcatcgagcgcgccgacaagttcggcctggcccagctgcaccag
ctgcgcggacgggtcggccgcagccaccaccaggcttatgcctacctgctgacgccaccg
cgccagcagatcaccccggacgcggaaaagcgcctggaggcgatcgccaatacccaggac
ctgggggccggcttcgtgctcgccactaacgacctggaaatccgcggcgccggcgaactg
ctgggtgacggccaaagcggccagatccaggcggtcggtttcaccctttacatggagatg
ctcgaacgcgcggtgaaagccatccgcaagggcgagcagccgaacctcgaccagccgctg
ggcggtggcccggaaatcaacctgcgcctgccggcgctgattcccgaagactacctgccg
gatgtgcatgcacggctgatcctgtacaagcgcatcgcctcggccaccgacgaggacggc
ctcaaagacctgcaagtggaaatgatcgaccgcttcggcctgctgccggaaccgaccaag
aacctggtgcgcctgaccctgctcaagctgcaggccgagcaactgggtatcaagaaggtc
gacggcggcccgcagggtggtcgcatcgagttcgccgccgacacgccggtggatccgctg
gcgctgatcaagctcatccagggccaacccaatcgctacaagtttgaaggcgctacgctg
ttcaaattcatggtgccgatggaacgtccggaagaacgcttcaatacattggaggcgctg
ttcgagcgcctcactccgaaaactgcctga
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integrated database retrieval system
