Pseudomonas chlororaphis PCL1606: PCL1606_40920
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Entry
PCL1606_40920 CDS
T03768
Name
(GenBank) topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcz03032
]
PCL1606_40920
03400 DNA repair and recombination proteins [BR:
pcz03400
]
PCL1606_40920
Enzymes [BR:
pcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PCL1606_40920
DNA replication proteins [BR:
pcz03032
]
Prokaryotic type
DNA Topoisomerases
PCL1606_40920
DNA repair and recombination proteins [BR:
pcz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
PCL1606_40920
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
AKA25541
UniProt:
A0A0D5Y2K4
LinkDB
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Position
complement(4484159..4486771)
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AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKAAAGE
APALSAKEKARKQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKGAN
VRFEVARENGEAFKPLNEAQAMAALEKLKASTYTIAKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALTMARTYIEEEFGNKYLPSSPN
FYSSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFVACQMLPAQYLSTTV
SVAAGGFELRAKGRILKFDGYTRVMPQMSKPGDDDVLPDMAQGDVLKLIKLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEEHLDDVAQGERDWKNVLDEFYGDFKKKLEVAEGTESGMRANQPVMT
DIPCLTCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESLVL
RGKHRCPICSTAMDAYLLDEKRKLHICGNNPDCAGYEIEEGSYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNPTCKNTRKLLKSGDAAPPKMDPVKMPELKCEKVNDTYILRDGA
SGLFLAASQFPKNRETRAPLVIELIPHKDEIDPKYHFLCEAPKKDPDGRPAVVRYSRKTK
EQYVQTEVDGKPTGWRAFYDGGSWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ttgggcaaccaatacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggcgagtgccgccaaagagcctgccgccaagcgtggcaaggcggctgctggtgaa
gcgcccgcgctgtcggccaaggagaaggcgcgcaagcagctggtctcgcgcatgggcgtc
gatccggaacacggctggaaagccaagtacgagatccttccgggcaaggaaaaagtcatc
gaagagctgcgccggctcgccaaggatgccgacaccatctatctcgcaacggacttggac
cgcgaaggggaggccattgcctggcacctgcgggaagccattggtggggatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaggcgatccaggaagccttctcccag
ccgggcgagctggatatcgaccgggtcaatgcccagcaggcgcggcgtttcctcgaccgc
gtggtgggctacatggtttcgccgctgttgtgggccaagatcgcccgtggcctgtccgcc
ggccgtgtgcaatcggtcgcggtaaagctggtggtggagcgtgagcgcgagatccgtgcc
ttcatccctgaagagtattgggaggtccatgccgatctcggtaccgccaagggcgccaat
gtgcgtttcgaagtggcccgcgaaaacggcgaagccttcaagccgctgaacgaagcccag
gccatggcggccctggagaagctcaaggcctcgacctacaccatcgccaagcgtgaagac
aaaccgaccagcagcaagccgtcggcgcctttcattacctctaccctgcagcaggctgcg
agcaaccgcctgggcttcggggtgaagaaaaccatgatgatggcccagcgtctgtatgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctctcggctgatgccttgacg
atggcgcgtacctacatcgaagaagagttcggcaacaaatacctgccgtcttcgccgaac
ttctacagcagcaaggaaggggcccaggaggcgcacgaagcgattcgtccgtccgatgtg
aatacccacccgagcaagctgtcgggcatggagcgcgacgctgagcgcctctacgagctg
atctggcgccagttcgtggcctgccagatgctgccggcgcaatacctgtcgaccaccgtc
agcgtcgccgctggcggcttcgagctgcgtgccaagggccgtatcctcaagttcgacggt
tacacccgcgtcatgccgcagatgagcaagccgggcgacgacgatgtcctgccggacatg
gcgcagggcgatgtgctgaagctgatcaagctcgatcctagccagcacttcaccaagccg
ccggcgcgctactccgaagccagcctggtcaaggagatggaaaagcgtggcatcggtcgt
ccttcgacctatgcggcgatcatttccaccatccaggatcgtggttatgtggcgctgcac
aaccgtcgtttctattcggaaaagatgggcgatatcgtcaccgagcgtctgtccgagagc
ttttccaacctgatggactacggcttcaccgccggcatggaagagcacctcgacgacgtg
gcccagggcgaacgtgactggaaaaacgtgctcgacgagttctacggcgacttcaagaag
aagctcgaagtggccgaaggcaccgaaagcggtatgcgcgccaaccagccggtgatgacc
gacatcccatgcctcacctgtggtcgcccgatgcagattcgtaccgcgtccaccggcgtg
ttcctcggttgctcgggctacagcctgccgccgaaggagcgttgcaaggcaacggtcaac
ctggtgccgggcgacgaaatcgccgcggacgacgaaggcgagtcggaatcgctggtgctg
cgtggcaagcaccgttgcccgatctgcagcaccgcgatggacgcctatctgctggacgag
aagcgcaagctgcacatctgtggcaacaacccggattgcgcgggttatgagatcgaagag
ggcagctaccgcatcaagggctacgaagggccgagcctggagtgcgacaagtgtggcagc
gaaatgcagctcaagaccggccgtttcggcaagttcttcggttgcaccaacccgacctgc
aagaacacccgcaagctgctcaagagtggcgacgcggcgccgccgaagatggatccggtg
aagatgcccgagctgaaatgcgagaaggtcaacgacacctatatcctgcgcgacggcgct
tccgggctgttcctggcggccagccagttcccgaaaaaccgtgagacccgcgctcccttg
gtgatcgagctgattccgcacaaggatgagatcgatcccaagtatcacttcctctgcgaa
gcgccgaaaaaggatccggacggtcgcccggcggtagtccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaagtcgacggcaagccgaccggctggcgcgcgttctacgat
ggcggtagctggaaggtcgaagacaagcgctaa
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