Pseudomonas chlororaphis PCL1606: PCL1606_49100
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Entry
PCL1606_49100 CDS
T03768
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03030
DNA replication
pcz03430
Mismatch repair
pcz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PCL1606_49100
03430 Mismatch repair
PCL1606_49100
03440 Homologous recombination
PCL1606_49100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pcz03032
]
PCL1606_49100
03400 DNA repair and recombination proteins [BR:
pcz03400
]
PCL1606_49100
Enzymes [BR:
pcz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PCL1606_49100
DNA replication proteins [BR:
pcz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PCL1606_49100
DNA repair and recombination proteins [BR:
pcz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PCL1606_49100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
HROB
Motif
Other DBs
NCBI-ProteinID:
AKA26357
UniProt:
A0A0D5Y5T6
LinkDB
All DBs
Position
complement(5335137..5338658)
Genome browser
AA seq
1173 aa
AA seq
DB search
MPASFVHLRLHTEYSLVDGLVRIKPLVKTLAGMGMPAVAVTDQNNMCSLVKFYKAAMGTG
IKPICGADLWLPNKDPDGPLSRISLLVMNAVGYRNLTELISRGFIEGQRNGQIIIEREWV
VEAAEGLIMLSAAKEGEIGMALVAGDLQEAENLAREWMAVFPDRFYLEVQRTSRPNDEEQ
LHAAVALADKIGAPLVATNDVRFIKREDFEAHETRVCIGEGRALDDPRRSKNYSDQQYLK
SAEEMAELFSDLPEALENTVEIAKRCNIDVKLGKHFLPNFPIPDGMTIDEYFRKVSFDGL
EERLAVLLPKDTTEDYEAKRQVYVDRLNFELDIIIQMGFPGYFLIVMDFIQWAKNNGVPV
GPGRGSGAGSLVAYVQKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIDYV
AEKYGRNAVSQIITFGSMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFIKVDEEAAEIWEMALKLEGITRGTGKHAGGVVIAPTKLTDFSPISCDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIDWALATINRDRAKTGEAPLDIAFIPLDDKPTYS
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHPDYQYEGLQPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCAGNGIDADLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKAHY
PAPFMAAVLSADMHNTDKVVTLIEEVRTMKLRLDAPDVNTSEFKFTVNDEGRIVYGLGAI
KGVGEGPVEAITEARAEGPFKDLFDFCARVDLKRINKRTLDGLIRSGALDRLGPYFHDEP
KAYQASIDQNRAVLLAAMEEAIKAAEQTARTHDSGHADLFGGLFVEEDADVYASHRKAKE
LTLKERLKGEKDTLGLYLTGHPIDEYEGEIRRFARQRIVDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFITLDDRSGRIEASLFADAFHSAQALLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKVHTEALKGDQLRWLGELCKRHRGACPISMEYTREDAKAL
LQFGEAWRIDPADALIQALRDQFGRDNVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgccggcttcattcgttcatctacgcctgcacactgaatattccctggttgacggcctg
gtgcggatcaagccgctggtcaagacgttggccggcatgggcatgcccgcggtggcggtc
accgaccagaacaacatgtgttccctggtcaagttctacaaggccgccatgggcaccggg
atcaagccgatctgcggcgccgacctgtggttgccgaacaaggaccccgacggtccgttg
agccgtatcagcctgctggtgatgaacgccgtcggttaccgcaacctgactgagctgatt
tcccgcggcttcatcgaaggccagcgcaatggccagatcatcatcgagcgcgagtgggtg
gtcgaggcggccgaaggcctgatcatgctgtcggccgccaaagagggcgagatcggcatg
gcgctggtcgccggcgacctgcaagaagcggaaaacctggcgcgcgagtggatggcggtg
ttcccggaccgcttctatctggaagttcagcgcaccagccgccccaacgacgaagaacaa
ttgcacgcggccgtggccctggcggacaagatcggtgcgccgctggtggcgaccaacgat
gtgcgcttcatcaagcgcgaagacttcgaggcccacgaaacccgggtttgcatcggcgag
ggccgggccctcgatgacccgcgtcgctcgaagaactatagcgaccagcagtacctgaaa
agcgccgaggaaatggccgagctgttcagcgacctgcccgaggcgctggaaaacaccgtc
gagatcgccaagcgctgcaatatcgacgtgaagctgggcaagcacttcctgcccaacttc
ccgattcccgatggcatgaccatcgacgagtactttcgcaaagtgtccttcgacgggttg
gaagagcgcctcgcggttctgctgcccaaggacactaccgaggattacgaggccaagcgc
caggtatatgtcgaccgcctgaatttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggactttatccagtgggccaagaacaacggcgtaccggtg
gggccgggccgggggtcgggtgccggatcgctggtggcctatgtgcagaagatcaccgac
ctcgacccgctggaatacgacctgctgttcgaacgtttccttaacccggaacgggtttcc
atgcccgacttcgacgtcgacttctgcatggacggccgcgaccgggtcatcgactatgtg
gcggaaaaatatggccgcaacgccgtaagccagatcatcaccttcggctccatggccgcg
aaggcggtggtgcgcgacgtggcgcgggtacaaggcaagtcctatggtctcgccgaccgc
ttgtcgaagatgattcctttcgaagtcggcatgaccctggaaaaggcctacgagcaggaa
gaaatcctgcgcgacttcatcaaggtcgatgaagaggcggcggaaatctgggagatggcc
ctcaagctcgagggcatcacccgtggtaccggcaagcacgccgggggcgtggtgatcgcg
cccaccaaactcaccgacttctcgcccatttcctgcgacgaagagggtggcggcctggtg
acccagttcgacaaggacgacgtcgaggctgccggcctggtgaagttcgacttcctcggc
ctgcgaaccctgacgatcatcgactgggcgctggcgaccatcaaccgggaccgggccaag
accggcgaggcgccgctggatatcgcctttatcccgctcgacgacaagccgacctacagc
ctgctgcaaaaagccgaaaccaccgcggtgttccagcttgaatcccggggcatgaaagag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggtggccctgttc
cgtccggggccgctgcaatcgggcatggtggacgacttcatcaaccgcaagcacgggcgc
gccgaactggcgtacccgcacccggactatcagtacgaagggttgcagccggtactggct
ccgacctacggcatcatcctgtatcaggaacaggtgatgcagattgcccaggtcatggcc
gggtataccctcggcggcgcggacatgctgcgtcgagccatgggtaagaaaaaacccgag
gagatggccaagcagcgcggcggtttcatcgagggttgcgccggtaacggtatcgatgcc
gacctggcgggtaacattttcgacctggtggagaaattcgccggttacggcttcaacaaa
tcccactccgcggcctacggcctggtttcctaccagacggcctggctcaaggctcactac
ccggcgcctttcatggccgcggtactgtcggcggatatgcacaacaccgacaaggtcgtg
accttgatcgaggaagtgcggaccatgaagctgcgcctggacgccccggacgtgaacacc
tccgagttcaagttcacggtgaacgacgaaggccgcatcgtgtatggcctgggggcgatc
aagggcgtcggcgaaggcccggtggaggcgattaccgaggcgcgcgcagaggggccgttc
aaggacctgttcgatttctgcgcccgggtcgacctcaagcgcatcaacaaacgcaccctg
gacggcttgattcgcagcggcgcgctggaccgtctggggccgtacttccatgacgagccg
aaagcctaccaggcaagcatcgaccagaaccgcgcggtcctgctggcggcgatggaagaa
gcgatcaaggcggcggagcagacggcccgcacccatgacagtgggcatgcggacctgttc
ggcggcctgttcgtggaagaggatgccgacgtctacgcgagccaccgcaaggccaaggag
ctgacgctcaaggagcgcctcaaaggcgagaaggataccttgggcctgtacctgaccggc
cacccgatcgacgagtacgaaggggaaatccgccgtttcgcccggcagcgcatcgtcgac
ctgaagccggcgcgcgatacccagaccgtggcggggatgatcattgccctgcgggtcatg
aagaacaagaaaggcgacaagatggggttcatcacccttgacgaccgttcgggccgcatc
gaggcttcgctgttcgccgatgccttccattcggcgcaggcgctgttgcagaccgacgcc
atggtggtggtcgagggcgaggtcagcaacgacgacttctccggcggcctgcgcctgcgg
gtcaagcgcgtgatgagcatggaggatgcccgcaccaacctggcggaaagcctgcggctg
aaggtgcacaccgaagccctcaagggcgatcagctacgctggctgggggaattgtgcaaa
cgtcatcgcggcgcctgcccgatctccatggaatacacccgggaggacgccaaggcattg
ctgcagtttggcgaagcctggcggatcgacccggcggatgccttgattcaagccttgcgt
gaccagttcgggcgagacaacgtcttcctccaataccgttga
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