Pseudomonas chlororaphis PCL1606: PCL1606_55140
Help
Entry
PCL1606_55140 CDS
T03768
Name
(GenBank) exoribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCL1606_55140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcz03019
]
PCL1606_55140
03016 Transfer RNA biogenesis [BR:
pcz03016
]
PCL1606_55140
Enzymes [BR:
pcz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PCL1606_55140
Messenger RNA biogenesis [BR:
pcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PCL1606_55140
Transfer RNA biogenesis [BR:
pcz03016
]
Prokaryotic type
tRNA degradation factors
PCL1606_55140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
TRAM
SRP-alpha_N
OB_Dis3
TRAM_2
Motif
Other DBs
NCBI-ProteinID:
AKA26959
UniProt:
A0A0D5Y7G4
LinkDB
All DBs
Position
complement(5993162..5995768)
Genome browser
AA seq
868 aa
AA seq
DB search
MADWQSLDPEAAREAEKYENPIPSRELILQHLADRGSPASREQLVEEFGLTTEDQIEALR
RRLRAMERDAQLIYTRRGTYAPVDKLDLILGRISGHRDGFGFLVPDDGSDDLFMSPAQMR
LVFDGDRALARVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEGGIGFVVADNPKVQQEV
LVTPGRNAGAKIGQFVEVKITHWPTPRFQPQGDVIEVVGNYMAPGMEIDVALRSYDIPHV
WPDAVLKEAGKLKPEVEEKDKEKRIDLRDLPFVTIDGEDARDFDDAVYCEAKPGKLRLFG
GGWKLYVAIADVSSYVKIGSALDAEAQVRGNSVYFPERVVPMLPEQLSNGLCSLNPKVDR
LAMVCEMTISKSGEMTDYQFYEAVIHSKARLTYNKVSTMLEHPKTSEAKQLRSEYGDVVP
HLKQLYALYKVLLGARHTRGAIDFETQETRIIFGSERKIAEIRPTTRNDAHKLIEECMLA
ANVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKEGPTPKDYQALLE
NIKDRPDYHLIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRS
VIHSKQNTPHVRRAGAMSIPKARIYPYDEATLEQLGEQCSMSERRADEATRDVVNWLKCE
FMKDRVGESFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTG
RSFRLGDTVEVRVMRVDLDERKIDFEMAEKTINAPIGRKKRGATDAPPAKAAAEPAPAKA
GRRGSAKEKPAEAYRSSDAAAKNAEVRKSREMKKALLAEAKSGGKVASGGKSGKPAPSKP
SKHRKGPPKAGAGPAAKSGGARKPKVKS
NT seq
2607 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagtccctcgatcccgaggccgctcgtgaagcggaaaaatatgaaaac
cctatccctagccgcgaactgatccttcagcaccttgctgatcggggttcgcctgccagc
cgtgagcaactggtcgaagagtttggtctgaccaccgaagaccagatcgaggcgctgcgc
cgccgtctgcgcgccatggagcgcgatgctcaattgatctacacgcgccgcggcacttat
gcgccggtggacaagctcgacctgatcctgggccgtattagcggtcatcgcgatggcttc
ggtttcctggttcccgacgatggcagcgatgacctgttcatgagcccggcgcagatgcgt
ctggtgttcgacggcgaccgcgcgctggcccgggtttccggcctggatcgtcgtggccgt
cgcgaaggtgtgatcgtcgaagtggtgtcccgtgcccatgagagcatcgtgggtcgttac
ttcgaggaaggcggtatcggtttcgtcgtggcggacaatcctaaggtccagcaggaagta
ctggtgacccctggccgcaacgctggcgccaagatcggtcagttcgttgaggtgaagatc
acccactggccgactccgcgtttccagccccagggcgatgtgatcgaagtcgtgggcaac
tacatggcgcccggcatggaaatcgacgttgccctgcgcagctacgatattcctcacgtc
tggcccgacgccgtgctcaaggaagccggcaagctcaagccggaagtggaagaaaaggat
aaagagaagcgcattgacctgcgcgatctgccgttcgtcaccatcgacggtgaagacgcc
cgcgacttcgacgacgctgtctactgtgaagccaagcctggcaagctgcgcctgtttggc
ggcggctggaagctgtatgtggcgattgccgacgtttccagttacgtgaagatcggttcg
gcgctggatgccgaggctcaggtacgtggcaactcggtgtatttccccgagcgcgtggtg
ccgatgctgcccgagcagctgtccaacggcctgtgctcgctgaacccgaaagtcgaccgc
ttggccatggtctgcgagatgaccatttccaagtccggcgagatgaccgactaccagttc
tacgaagcggtgatccactccaaggcgcggctgacctacaacaaggtcagcactatgctc
gaacatccgaaaaccagcgaagccaagcaactgcgtagcgaatacggcgatgtcgtaccg
cacctcaagcagctttatgcgctgtacaaggtgctgctgggggctcgacacacacgcggc
gccatcgatttcgagactcaggaaacccggatcatcttcggttccgagcgcaagatcgcg
gaaattcgcccgacgacccgcaacgatgcgcacaagttgatcgaggaatgcatgctggcg
gccaacgtggccaccgcggaattcctcaagaaacacgaaattcctgcgctctaccgcgtg
cacgacggcccgccaccggagcgtctggaaaagctgcgggcattcctcggcgaactgggc
ctgtcgctgcataaaggcaaggaaggcccgacgccgaaggattaccaggcgttgctggag
aacatcaaggatcgtccggactaccacctgatccagactgtcatgctgcgctcgctgagc
caggcggtgtacagcgccgacaatcagggccacttcggcctgaactacgaagcctatacc
cacttcacttcgccgatccgccgttatccggacctgctgacgcatcgggcgattcgcagc
gtcattcactccaagcagaacacgcctcatgtgcgtcgtgccggggcgatgagcattccg
aaggcgcgcatctatccgtacgacgaggcgacgctcgagcagctcggcgagcagtgctcg
atgagcgagcggcgtgccgacgaggcgactcgcgatgtggtgaactggctcaagtgcgag
ttcatgaaggatcgggttggcgagtcgttcccgggcgtgatcaccgcggtgaccggtttc
ggtctgttcgtcgagctgaccgatatctatgtggaaggcctggtgcacgtcaccgcgctg
ccgggcgactactaccacttcgatcccgtgcaccaccgtttggccggtgagcgtaccggt
cgcagtttccgcttgggcgataccgtggaagtgcgggtcatgcgcgtggatctggacgag
cgcaagatcgatttcgagatggcggaaaaaaccatcaacgcgccaatcggtcgcaaaaag
cgcggtgctaccgatgcgccgcctgccaaggccgccgccgagccggctccggccaaggcc
gggcgccgtggttcggccaaggagaagccggccgaggcttaccgctcgagcgacgccgcg
gcgaaaaacgccgaagtgcgcaagagccgtgaaatgaagaaggcgttgctggccgaagcc
aagagcggtggcaaggtggcttcgggtggcaaatccggaaagcccgcgcccagcaagcca
agcaaacatcgtaaaggtccgccaaaagcgggcgcgggtccggctgcgaaaagcggcggg
gcacgtaaacccaaggtcaagtcatga
DBGET
integrated database retrieval system
