Pseudomonas chlororaphis PCL1606: PCL1606_57840
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Entry
PCL1606_57840 CDS
T03768
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pcz
Pseudomonas chlororaphis PCL1606
Pathway
pcz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pcz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PCL1606_57840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pcz03019
]
PCL1606_57840
03400 DNA repair and recombination proteins [BR:
pcz03400
]
PCL1606_57840
Enzymes [BR:
pcz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PCL1606_57840
Messenger RNA biogenesis [BR:
pcz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PCL1606_57840
DNA repair and recombination proteins [BR:
pcz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PCL1606_57840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
AAA_22
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
AKA27229
UniProt:
A0A0D5Y887
LinkDB
All DBs
Position
complement(6289574..6291508)
Genome browser
AA seq
644 aa
AA seq
DB search
MHDTLEQVFGYPQFRPGQEATVGAVLAGRSAAAIFPTGSGKSLCYQLPALLLPHLTLVVS
PLLALMQDQLAFLQGRGIAAASIDSAQGRDEANEVMARARRGELKILMISVERLKNERFR
NFLQQVRISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFHIPQALLLTATATPKVIADM
QAKFAIAAQDVVTTGFYRPNLNLLVEPVRGQDKRQRLVQWLGARAGQPSIVYVTLQKTAE
HIAEHLGRHGIQAKAYHAGLPHEQREAIQRQFMAGQCNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPELEGIRWVLDELQ
GAAPDGQWEFLLGQLADQSNIRQLPLKTLLVQLELRGLIAPRYAYFAEYRFKFIEEPEVL
LARFEGERRDFVAAIIETSSRARTWATVNFEALYQQHQAERSRVVKALDYFQEKGWVELE
SKQMTEVYTLLDTSFDADGLSRQLHAYFKQHESGEIARIHAMLELFATEQCLGARLARYF
GDDQAPQRCGHCSVCHGQVARLPEPPALPALVDKNFEALCGEFIHRHQQHCGTVPEAERL
TRFLCGISVPLFTRLKARSIPGFAVLEDYPYAEVRDWAEHRLKN
NT seq
1935 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctcgaacaggtcttcggttatccacagtttcgtcccggccaggaggca
acggtcggtgcggtgctggccggacgctcggcggcggcgattttccccaccgggtccggc
aagtccctgtgctatcagttgccggccctgttgctgccgcacctgaccttggtggtctcg
ccattgctggccctgatgcaggaccagctggccttcctccaggggcgtggtatcgctgcg
gcgagcatcgattcggcgcagggccgcgatgaggccaacgaggtgatggcgcgggcgcgc
cgcggcgaactgaagatcctgatgatctcggtggagcgcctgaagaatgagcgtttccga
aatttcctgcagcaggtgcggatttccctgctggtggtggacgaggcgcactgcatctcc
gagtggggccacaactttcgccccgactacctcaagcttccggactaccagcgccagttc
cacattccccaggcgctgctgctgaccgctaccgcgacacccaaggtgatcgccgacatg
caggcgaaattcgccatcgccgcgcaggatgtagtgaccaccggtttctaccggcccaac
ctcaacctgctggtggagccggtgcgcggccaggacaagcgccagcgcctggtgcaatgg
ctgggcgcgcgcgccggtcagccgagcatcgtctatgtcaccctgcagaaaaccgccgag
catatcgccgagcacctggggcgccacggtatccaggccaaggcctatcatgccggcctg
ccccatgagcagcgcgaggcgatccagcgccagttcatggccggccagtgcaattgcatc
gtcgccaccattgccttcggcatggggatcgacaagagcgacatccgtaacgtggtgcat
ttcgacctgcccaaatccatcgagaactacagccaggaaatcggccgtgccgggcgtgac
ggccagccttcagactgcttggtgctggccaaccgcgacagcctcaacgtgctggaaaat
ttcgtctacggcgacacgccggagctggaaggcattcgctgggtgctggacgaactgcag
ggcgcggcacccgacgggcagtgggaattcctgctggggcagctggcggatcagagcaac
atccgccagctgccgctcaagacgttgctggtgcagctggaactgcgcggcctgatcgcg
ccgcgttacgcctacttcgccgagtaccgtttcaagttcatcgaggagccagaggtgctg
ctggcgcgtttcgagggcgagcgccgggacttcgtggcggcgatcatcgagacgtccagc
cgtgcccgcacctgggccacggtgaatttcgaggcgctttaccagcagcaccaggccgag
cgcagccgggtggtgaaggctttggactacttccaggaaaagggctgggtggagcttgaa
agcaagcagatgaccgaggtctacaccctgctggatacgagcttcgatgccgatggcttg
agccggcaactgcatgcctatttcaagcagcatgaaagcggcgagatcgcgcggatccac
gccatgctcgaactgttcgccaccgagcagtgtctcggggcacgcctggcccgatatttc
ggcgacgaccaggcgccccagcgttgcgggcattgttcggtgtgccacggccaggtagcg
cgcctgccggagccgccggcgctacccgcgcttgtggataaaaacttcgaggcgctgtgc
ggcgaatttatccacaggcaccaacaacactgcggcaccgtcccggaggcggaacggctg
acgcgcttcctgtgcgggatcagcgtgccgctgttcaccaggctcaaggccaggtcgatc
ccggggtttgcggtgctggaggattatccctacgccgaagtgcgcgactgggccgaacat
cgtcttaaaaactga
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