Pseudomonas chlororaphis PCL1606: PCL1606_58600
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Entry
PCL1606_58600 CDS
T03768
Name
(GenBank) type IV secretion protein Rhs
Organism
pcz
Pseudomonas chlororaphis PCL1606
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Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
DUF6531
RHS
TEN_YD-shell
DUF4595
AfaD
Motif
Other DBs
NCBI-ProteinID:
AKA27305
UniProt:
A0A0D5Y8E5
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All DBs
Position
6371539..6376278
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AA seq
1579 aa
AA seq
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MGPISAIEQQLDTFKNSLVRYHEQLKNWYAQAPQDLLFKSRRPSLLAMEDVIGYSGIHLS
DFEIPLSCLARCPLGEPLLIESKLKSAHDIPLGGIQVEVVSLLGATQATLRLDSKGKGSF
QGTPGEYYKIRVHNKVTPADIDILFDLYDKLGGALEHWLRAEWARFKPQWPKQSGYTWLY
PKQVGIFAADRSTINGVWRRIRWILNILKDPKRHSRRLEDEAQSLVELAQTQPEAMKRAM
LLASDEAALFLLVRSASIWLSALPPTQYSDTTALTISSNIISALIDMVLAVVLNIASGGL
GDNYLNRRLNARNDFEAVNDFLAAVSTITDARIQYLEQYTTVAARGVTTLVKNGLVKLYF
DGKRNSRLNSPPMLPDASSGATTPDQQINDAASNTCTNGCPVSMVTGEELLTLTDGELDG
LLPFQWTRLYRTSAAEIDCGLGHGWSHALAQRLEIQGDSVVWTDHENRSMTFPLPDEQRP
TITNTLSRAAIFRGDDPAELILSQAGETAQLFHFRYNDRGATLVAISDAYDNRLHITRDI
QGRIKRLDNGAGRALLLRYDRSHIVAVDYQQFVPADTQEDSWSTLKTLVSYRYDAQHHLI
EAKNAAGEAEHYRYNEQHVILERQLAGGASFYWEWERQGKHSRCVRHWASFAQVSQRYVW
DDQGSVTVIYADGSEEIYTHDGQARLIGKVDPSGAEYRKAYDDKGRLIAEQDPLGAITEY
QYDEAGQQVAVITPEDEPITYEYENGLVSEMHCGQASWAYEYNAQGDITRQTDPDGHATR
YSYDRQGRLLEIRYPDESHHRLGWNNLGQLLEEHLPDGSQRKYRYDALGRQITRQDENGA
ITHYQWDAANRLSLITLPGGASRAFSYNAYGKVTGERDELGRITRYEYADGLHLVSRRIN
PDGSQLDYRYDSTRLWLTGIENERGEQYRLDYYPNGLLQQETGFDGRRTAYTYDLNGNLL
KKTEFGDDGSERVTAYQRDASGRVLVKTLADGEKIHYSYDTLGRLVGVDDGHWPLAYEYD
LQDRLITEHQGWGTLRYQYDALGQLSHCRLPDGSKLDYHYQPGGQLSGIDLNGARLTRHQ
YGAGLESQRQQGLLLSQYQYDDQGRLRAHDISQQNHNLLKRRYAYDANGNLAGIEDSRKG
NRRYQYDPLDRLIHVRGSTPESFAHDPAGNLLGGGDQPVTDQANVKGNRLLMQGDRHFDY
DAFGNLSRERRGTGQKLVTEYRYDCQHRLIGVSLPGGSTATYQYDAFGRRIAKTVDGRTT
EFLWQGDRLIAESAENRYRSYLYEPDTFRPLAMLDGEGPLKAEPFYYQLDHLGTPQELTD
YSGDIMWSARYRAYGNLAALDIEEIDNPLRFQGQYFDAETGLHYNRHRYYNPGIGRFLTP
DPIKLAGGLNSYQYVPSPTGWVDPLGLMSVTRSITSKFVPGFKGKVPSLTSMLTGKRAEI
TSALEEVVQPHIKEITQLDGNARIGFRGSLARGQKGPHKGNAPFDPSDFDVDAFIVSDRL
AANFNKSYLFRSGNRIVKVSRIQKEIDKSLRQRIEFSGLRSDRFTFRIFTHKEIERLQEK
GDFQLFFIEQGKQYENRNL
NT seq
4740 nt
NT seq
+upstream
nt +downstream
nt
atgggccccataagcgcaatcgagcagcaactggataccttcaaaaacagcctggtgcgt
tatcacgagcagctcaaaaactggtatgcccaagccccgcaagaccttctcttcaaaagt
agaaggccttccctgctggccatggaggatgtgatcggatacagcggtatccacctctca
gactttgaaattccgctctcttgccttgctcgatgcccactcggggaaccactgctgatc
gagagcaaactgaaatcggcccatgacattcctcttggcggcatccaggtcgaagtggtt
tctctgctgggggctacacaggccacgctgaggcttgattcaaagggcaagggaagtttc
cagggaacccccggcgagtactacaagattcgcgtgcacaacaaggtgacgccggcagat
atcgatatcctgtttgacctctatgacaagcttggcggcgcactggaacactggctccgt
gcagagtgggcccgcttcaagccgcagtggccaaaacagtcgggctatacatggctgtac
ccaaaacaagtgggaatctttgccgcagacaggagcaccatcaacggcgtctggcgccga
atccggtggattctcaatatcctgaaggatcccaagaggcattccagacgactggaagac
gaggcgcaatcactggtagagctggcgcaaactcagcccgaggccatgaagcgggcgatg
ctactggccagcgatgaagccgctctgttcctgctggtacgcagcgcctcgatctggctc
agcgcactgccacccacccagtactccgatacgacggccctcaccatttcttccaacatc
atctcggccttgatcgacatggtgctggccgtggtgctgaacattgcctctggcgggctt
ggggataactacctgaaccgccggctgaacgccaggaacgacttcgaggcggtgaatgac
tttcttgccgccgtcagtacgatcaccgatgcccgtatccaatacctcgagcaatacaca
accgtggccgcacgcggtgtaacgacgctggtcaagaacggcctggtaaaactctacttc
gatggcaagcgcaacagccggctgaacagcccgccaatgctgcccgacgcctccagtggg
gccaccacccccgatcagcaaatcaacgacgccgccagcaatacctgcaccaatggttgc
ccggtgtccatggtgaccggcgaggaactgctgacgctgaccgacggcgaactggatggc
ttgctgcccttccagtggacccgcctgtatcgcaccagtgccgccgaaatcgactgcggc
ctgggccatggctggagccatgccctcgcccaacgcttggaaatccagggtgacagcgtc
gtctggaccgaccacgaaaaccgctcgatgaccttccccttgcccgacgagcaacgcccg
accatcaccaacacgctgtcacgggcggcgatctttcgcggcgacgaccctgccgagctg
atcctcagccaggccggcgagaccgcgcagctctttcactttcgctacaacgaccggggc
gcaacgctggtcgccatcagcgatgcctatgacaaccgcctgcacatcacccgcgatatc
caggggcggatcaaacgcctcgacaatggcgccggccgcgccctgctactgcgttatgac
cgcagccacatcgtcgccgtcgactaccagcagttcgtccccgcggacacccaggaagac
agctggagcacgctcaagaccctggtcagctaccgctatgacgcgcaacaccacttgata
gaggccaagaacgcggcaggcgaagccgagcactaccgctataacgagcagcacgtcatt
ctcgaacgacagctggcgggcggggcgagcttctattgggaatgggaacgccagggcaag
cactcccgctgcgttcggcactgggccagctttgcccaggtcagccagcgttacgtctgg
gatgaccagggcagcgtcacggtcatctatgccgatggcagcgaagagatctatacccat
gacggtcaggcccggctgatcggcaaagtcgatcccagcggtgccgagtaccgcaaggcc
tatgacgacaagggccggttgattgccgagcaggacccgctgggcgccatcaccgaatac
cagtacgacgaggccggccagcaagtcgcggtgattacgcccgaagacgagcccatcacc
tacgagtacgaaaacgggctggtcagtgaaatgcattgtggccaggcgagctgggcctat
gagtacaacgctcaaggcgatatcacccgccagaccgaccctgacggccatgccacccgc
tacagctacgatcgccagggccgcctgctggagatccgttatcccgacgagagccaccac
cggctgggctggaacaaccttggccaactgctggaagaacacctgcccgacggtagccag
cgcaaataccgctacgacgccctgggccggcagatcacccgccaggacgaaaacggcgcc
atcacccactaccaatgggacgccgccaaccgcctcagcctgatcaccctgcccggtggc
gccagccgtgccttcagctacaacgcctacggcaaggtcaccggcgagcgcgacgagctg
gggcgcatcacgcgctacgaatacgccgacgggctgcacctggtcagtcgacgcatcaac
cccgatggcagccagctcgattaccggtacgacagcacccgcctgtggctgaccgggatc
gaaaatgaacgcggcgagcagtatcgcctggactactaccccaacggcctgctgcagcag
gagaccggcttcgacggacgccgtaccgcctacacctacgatctcaacggcaacctgctg
aagaaaaccgaattcggcgacgacggcagcgagcgggtcaccgcctaccagcgcgatgcc
agcggccgcgtgctggtgaagaccctggccgatggcgaaaagatccactacagctatgac
accctgggccgcctggtcggggtcgacgacggtcattggccgctggcctatgaatacgac
ctgcaagaccgcctgatcaccgaacaccagggctggggcaccctgcgctaccagtacgac
gcactcggccaactcagccactgccgcctgccggatggcagcaagctcgattaccactac
caacccggcggccaactgagcggcatcgacctcaacggcgcgcgcctgacccgtcaccag
tacggcgccggcctcgaaagccagcgccagcaagggttgctgctgagccagtaccagtac
gacgaccagggacgcctacgcgcccatgacatcagccagcaaaaccacaatctgctgaaa
cgccgctacgcctacgacgccaacggtaatctcgcgggcatcgaagacagccgcaaaggc
aatcgccgctaccagtacgacccgctcgaccgtctgattcacgtgcgcggcagcaccccg
gaaagcttcgcccacgaccccgccggcaacctgctgggcggtggcgaccagcccgtcacc
gatcaggccaatgtcaaaggcaaccgcctgctgatgcagggcgaccgccacttcgactac
gacgccttcggcaacctcagccgcgaacgccgcggcaccgggcagaagctggtcaccgag
taccgctacgactgccagcatcggctgatcggtgtcagcctccccgggggcagtaccgcg
acctaccaatacgacgccttcggccggcgtatcgccaagaccgtcgacggccgcaccact
gaattcttgtggcaaggcgatcggctgatcgccgaaagcgctgaaaatcgctaccgcagc
tacctctatgaacccgacaccttccgccccttggccatgctcgacggcgaaggcccgctc
aaggccgaacccttttactaccaactcgaccacctcggcacgccacaggaactgacggac
tacagcggcgacatcatgtggtcggccaggtatcgggcctatggcaacctggctgcgctg
gatattgaggaaatcgataatccgttacggttccaggggcagtatttcgatgccgaaacc
gggctgcactacaaccggcatcgttactacaacccgggtatcggccgctttctaacaccg
gatccgatcaagctggcgggggggcttaatagttatcaatatgtgcccagccctacggga
tgggtggatccactgggattgatgagtgttacaaggtccatcaccagtaagttcgtcccc
ggatttaaaggtaaagtcccctcgctaacttctatgctgaccggcaaacgtgcggaaata
acttcggctttagaggaagttgttcaacctcatataaaagaaataacccagcttgacgga
aacgcacgaattggattccgtggcagcctggctcgaggacaaaaggggccacacaaaggc
aatgccccatttgacccatcagactttgatgttgatgccttcatagtgagtgacagactt
gctgcaaatttcaataaaagttacctattcagaagtggaaaccgtattgtcaaggtttca
agaatccaaaaagaaattgataaatccctaaggcagcgtatagagttctctgggctcaga
agtgaccgtttcacctttcgtatattcactcacaaggaaattgaaagactccaggaaaaa
ggcgactttcaactattcttcattgaacaaggaaagcaatatgaaaaccgtaacctatag
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