Phoenix dactylifera (date palm): 103695506
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Entry
103695506 CDS
T03274
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103695506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103695506
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103695506
mRNA degradation factors
5'-3' decay
Decapping complex
103695506
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
103695506
NCBI-ProteinID:
XP_008775079
UniProt:
A0A8B7BE94
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Position
9:1647249..1661219
Genome browser
AA seq
808 aa
AA seq
DB search
MAGLDGEGGVSEDPAGPDNGFGRLAGGLSENARFDASQYAFFGNDVMEEVELGGLEEVDG
GDPGFIGLNDQDNQFSYLGDGVEGDGLGSLSDIDDLASTFSKLNKVVGEPRGSGAIGDRG
SFSRESSSTADWAQEQDFSKCLDQNILDNESVQDGKRWWSQPHPSSARAGESGPLYRTSS
YPQQPPQHNPSEPILRTKSSYTSYPPGGPSQASPNHARQINVSSPTAGLQMPFSAPNPSH
FSQLHLAGVPHGLQYGGNMSQFGPPGLSISNRQQNWLKQANFFSGEHSNFSPNLMQQQLP
QSNGLMPPQLFPPQHQHRMPQIQSSLSHISQMQSQLFSPHPPPLQMMNNFEPMLGMAELR
DQRLKPMQRGRQILRFAQHGSDTSSQKSDNGWPQFRSKYMTAEEVENILRMQHAATHGSD
PYVDDYYHQACLAKKSAGSRLKHHFCPTSIRDLPSRARAKDEPHAYLQVDALGRLPFSSI
RRPRPLLEVDLPSASGDSILDQKSSVKPLEEEPMLAARITIEDGFCLLLDVDDIDRLLQF
SLLQDGGSPVKRRRHALLEGLAASLQLVDPLGPGKAGNSVGLAPKDDLVFLRLVSLPKGR
KLLSRYLQLLIPGSELARIVCMAIFRHLRFLFGALPSDSSAAETANSLAKTVSLCICGMD
LSALSACLAAVVCSSEQPPLRPVGSSAGDGASIIIKSVLERATELLTDRHAATNYSMSNR
ALWQASFDAFFGLLTKYCQNKYDTITQSLLMQAPNPAIIGPDATRAISREMPVELLRASL
PHTDEHQRKLLLAFAQRSMPVTGYNAMS
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atggcagggctcgatggggagggtggggtttcggaagaccctgctggcccggataacggg
tttggacgattggccggtggtttatcagaaaatgctcggtttgatgcttcacaatatgca
ttttttggtaatgatgttatggaggaagttgagttggggggattggaagaagttgatggt
ggtgatcctggctttattgggctcaatgatcaggataatcaattttcttatcttggtgat
ggagtagagggtgatggtttaggatctttatctgatattgatgaccttgcaagcactttc
tcaaagttgaacaaagttgttggtgaaccaaggggctcaggagcaattggtgatagggga
tccttttctagagaaagttcttctactgcagactgggcacaggagcaagatttctcaaag
tgcctagatcaaaatatattggacaatgaaagtgtccaggatggtaaacggtggtggtca
cagccacatccttcttcagctcgtgctggagaatccggacctctgtacagaacctcctca
tatcctcaacaaccaccacaacataatcctagtgaaccaattctaagaactaaatcatcc
tatacttcctaccctcctggtggaccgtcacaagcttctccaaatcacgcacgccaaata
aatgtctcatctcctactgctggactccagatgcctttctctgcaccaaatccctcccat
ttctcccagcttcatttggcaggagtacctcatggattgcagtatggtggaaatatgtct
cagtttggtcctccaggtctctccattagtaacagacaacagaattggttgaagcaagct
aatttcttttcgggtgaacattccaatttttcacctaacttgatgcagcagcagttgcct
caatcaaatggtctaatgccgcctcaactatttccaccacagcaccaacatagaatgccc
caaattcaatcatctctatcacatatctcgcagatgcagtctcagctgttcagtccacat
cctcctccactacagatgatgaataattttgaaccaatgcttgggatggctgagttaaga
gaccagagattgaaaccaatgcaaagggggagacagatacttcgatttgctcagcatggt
tctgataccagcagccagaagagtgacaatggatggccacagttccgatctaagtacatg
acagctgaagaggtagaaaacattttgagaatgcagcatgctgcaacccatggcagtgac
ccctatgtagatgattactaccaccaagcttgtcttgcaaagaaatctgctgggtcaagg
ctaaagcaccatttctgcccaacttccattcgggacctgccatcccgagcacgtgctaaa
gacgaaccacatgcttatcttcaggtggatgctcttgggaggcttcccttttcttctata
cgaaggcctcgacctcttcttgaagttgacctgccctcggcatcaggtgatagcatcctt
gatcagaaatcttctgtgaagcctcttgaagaagagccaatgttggcagctagaatcacc
attgaagatggcttttgccttcttcttgatgtagatgatattgatcgcttgctacaattc
agcctgctacaagatggtggctccccggtcaaaagaagacggcacgccctcctggaaggg
ctcgcagcatcacttcagctagttgatccacttggccctggaaaagctggcaattcagtg
ggtctagccccaaaagatgatcttgtgttcctccgtcttgtttctcttcccaagggccga
aaacttctttcacgctatcttcaacttctaattcctggcagcgagctggctcggatagtc
tgcatggctatcttccgccacctgaggtttttatttggtgcattgccctcagattctagt
gcagccgaaactgctaacagtcttgcaaagactgtttctttatgcatttgtggcatggat
ctgagcgccctcagtgcttgccttgctgctgtagtttgttcatctgaacagccaccgctt
cgccctgttggaagttctgctggtgatggtgcctccatcataataaaatctgttcttgag
agagcaacagagctgctgacggaccgccatgctgcaacaaattacagcatgtctaaccgg
gctctgtggcaagcatcatttgatgccttctttggtctcctcacgaagtactgtcagaat
aagtatgacactataacgcaatccttgctcatgcaggcaccaaatcctgcaattattgga
ccagatgcaactagagctataagcagggagatgccggtggagttgttacgtgccagtctc
cctcacactgatgagcatcagcgcaagctgttacttgcttttgctcagcggtccatgcct
gtcactgggtataatgctatgtcctaa
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