Phoenix dactylifera (date palm): 103695795
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Entry
103695795 CDS
T03274
Name
(RefSeq) polyadenylate-binding protein 7-like
KO
K13126
polyadenylate-binding protein
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103695795
09123 Folding, sorting and degradation
03018 RNA degradation
103695795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103695795
03041 Spliceosome [BR:
pda03041
]
103695795
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103695795
mRNA cycle factors
Stress granule specific factors
103695795
Spliceosome [BR:
pda03041
]
Complex C
Other components
Complex C specific factors
103695795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RBD_DEAH11
RRM_RdRP1_2
RRM_10
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
103695795
NCBI-ProteinID:
XP_008775430
UniProt:
A0A8B7BFH8
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Position
4:464598..469111
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AA seq
668 aa
AA seq
DB search
MGEATKTMAAGSPSAAAVGDPSAVAALSLVPRGATIYVGDLDPSVTETDLLNAFASIGPI
ASVRLCRDRASGDSLHYAYLNFLSPLHARRAIRFMNHVSLNGKPIRIMWSRRDPLSRKSG
IGNLFVKNLEESVTGMELEAMFSWYGTVESCKVATDEKGRSKGFGFVQMDSEMAAMAAIE
ALNGMILTGSSKKLYVSKFVRKSERQTLHKEPICTNLYIKNLDCDTTDDILYGKFSEYGK
VISAVVMKDKDGKSRGFGFVNFELPEHAKKALEAMNGSKLGSKSIYVGYAQKKAEREKLL
RLQFSERHDQHFKRIQGSNVYVKNLDDSVDDKVLRGYFAGCGNIISTKVMHDKNGLSRGF
GFVCFSSPKEASNAVAQLNGAMFHGRHLYVAIAQHKEDRRKALQLHFANMPVRHAVHFGF
PSVYYTPQYGQLQNSGYTSRQHGMGHFLGNQYFEIPNQIKQRAYATASCANKAPIPLQTK
NDPFVSQFHYPVYRVNPLPSIYKVQPPRYNGYFEAPCSYNGYSEAPCSFKFAKAVNACYS
QFEVPKLYRSAKGVNKTCYTVDSSHRLKEVDRLDRLDRVVATVEPKQQTSMIREQLYPLV
QKLEPEHSSEVTNKLLEMNVTELHKILLSPGLLSQRVADAVQVLEGLEAKAATDDNHEID
GQQMQPKS
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgggggaagcgacgaaaacgatggcggcagggagcccgagcgcggcggcggtgggggac
ccgagcgcggtggcggcgctgtcactcgtcccgcggggcgcgacaatctacgtgggggat
ctcgacccgtccgtcaccgaaaccgaccttctcaacgccttcgccagcatcggccccatc
gcctccgtccgcctctgccgtgaccgcgcctccggcgactccctccactatgcctacctc
aactttctctcccctctccatgccaggagagcgatccggttcatgaatcacgtctctctc
aatggcaagcccatccggatcatgtggtcccgccgagaccccctctcgagaaagtccggc
atcggtaatctcttcgttaagaatttggaggaatcggtgaccgggatggagctggaggcc
atgttctcatggtacgggacggtggaatcgtgcaaggtggcgacggatgagaaggggagg
agcaaaggattcggcttcgtccagatggattcggagatggctgccatggcggccattgaa
gccctcaatggcatgatcttaactggttcaagcaagaaactgtatgtatcgaagtttgtt
aggaagagtgaaaggcaaaccctgcacaaagaaccaatatgcaccaatctttatataaag
aacctggactgtgataccacagacgatattctttatggcaagttctccgaatatgggaaa
gtcatcagtgctgttgtcatgaaagataaagatgggaagtcgagaggatttggatttgtt
aactttgagttgccagagcatgccaagaaggctttggaggctatgaatggctcgaaactt
ggatcaaagtctatatatgtaggatatgctcaaaaaaaagctgaacgtgagaagctacta
aggcttcagttttccgagaggcatgaccaacactttaaaaggatccagggttcaaatgtg
tatgtgaagaaccttgatgactcagtcgatgataaagttttgcgaggatattttgctgga
tgtgggaacataatttcaacaaaagtgatgcatgataaaaatggtctgagcagggggttt
ggatttgtgtgtttctcctcccccaaggaagcaagcaacgccgttgcacaattaaatggg
gccatgttccatggcagacatctatatgttgcaattgctcagcacaaggaagatcgccgt
aaagctttgcagcttcactttgctaatatgccagtacgacatgctgtgcactttgggttt
ccatcagtatattatacaccacaatatggacagcttcaaaattcagggtacactagtcgg
cagcatgggatgggtcattttcttgggaatcaatacttcgagatccctaatcaaataaag
cagcgagcttatgcaactgctagctgtgcaaacaaggctcccatccctctgcaaacaaag
aatgatccatttgtttctcagtttcattatcctgtttatagagtgaatccactgccatcc
atatataaagtgcagccaccgaggtacaatggttactttgaggctccatgttcatacaat
ggttactctgaggctccatgttcattcaagtttgccaaggcagtgaacgcctgctactct
cagtttgaggtgccaaaattgtaccgatctgcaaagggggtgaataagacatgctacacc
gtggattcctctcatcgcttaaaggaagtggacaggctggacaggctggacagggtggtt
gcaactgtagagcctaagcagcagacgtcaatgattagagaacaactctatcctcttgtt
cagaagctcgagcccgagcattcatcggaagtaacaaacaagctgttggagatgaatgtc
actgagctgcataagattctactgtcacctggtttgctatctcaacgggtggcagatgca
gtccaagtcttggagggattagaggctaaggcagctacagatgacaatcatgagattgat
gggcagcagatgcagcccaagtcctga
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