Entry |
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Name |
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
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KO |
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Organism |
pda Phoenix dactylifera (date palm)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:pda00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103696124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:pda03041]
103696124
Enzymes [BR:pda01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103696124
Spliceosome [BR:pda03041]
Complex C
Other components
Step II factors
103696124
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
Unknown
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AA seq |
1728 aa
MRPSTSSPPFPPSPAGQWRCISWPATPHPCPQPPMPLRPFMVLLIRGGGKRDPTRRELDA
IDALINSGPSRPTEFFVYASGRVAAKLFYWKEGETMDSVLFFWRRRLEGAHLLRPKVVVA
GTSIRYDREEEAGRVRALFVAHAYDLHKGESVKRCEQRIGEITAEIKKLSAQLGGRNRLK
DYEKLYAKRTQLHTEEEQLKKKMEEFRAAMHCILCHLGEPLEEVGLEKEAAFELLKFAGG
RDWGCIHSVMVRECRRLDDKLPIYACRRQILRNIVANQVMILIGETGSGKSTQLVQYLAD
SGLVTDGSIVCTQPRKIAAISLAQRVAEESYGCYAENYVVSYPAYSSSQVFNSKVMFMTD
HCLLQHCMNGTSLAGISYIIIDEAHERSLNTDLLLALIKRNLLERYDLRLIIMSATADAS
KLSDYFCGCSTFYVLGRNFPVEVKYVPDISANASYASITKHYSGNYSSYLSDVVKMVNVI
HKTEDNGAILAFLTSQIEVEWACEKFDDPSAIVLPMHGKLSCEEQNRVFQSYPGKRKIVF
STNVAETSLTIQDIKYVVDSGMVKESKFDPSSGMNVLKVCRISQSSANQRAGRAGRTAPG
KCYRLYSEHDFQSMQMHQEPEIRKVHLGIACLRILALGVKNVQDFEFIDAPSPKAVEIAT
QSLIQLGAIISYEDAFELTETGHCLTKLGIEPRLGKIILDCISCGLIKEGLVLAAVMTNA
SSIFCRVGSHEQKHKADCLKVPFCHHDGDLFTLLSVYKEWEDENESKSKWCWQNSINAKS
MRRCQDTMQELENCLRHELKIVIPKYWLWNPHKPSKHDKSLKKVILASLAENTAMYSGCD
QLGYKVALTGQNLPLHPSCSLIVYGHKPSWVVFGEILSISDQYLFCVTAVDYDCLYKIEP
PLFDVLQLESQKMHMNVVTGVGVNLLRRLCGKSNNNLRCLVSCVQEVCKDKNICIDVDFN
KREIQLFAPENNMGKVCSIVNDALELERRWLRDECIEKCLYHGNLGVSPFALFGSGAEIK
HLELQKRYLTVQISHPSAHTLDDKELLMMVDKHGYGIANFHKHAGSGQGGSDLNKWGKVT
FLSPEAAEDAVARLNDVEFHGSLLKVLPLRAGDHTVLPFPLVRAKICWPRRPSKGAALIA
CAKEDAEFIVKDCSALLIGERYVNCEVSVKSKDCVFVTGIQKDITEPEIYDAFIGATERR
ILGVRLLRGEAMNNLPPSTYAEFLVREIAPFVPSKNSSNSFWVEVFDYEPRDWMVKALIT
FDGNLHLEAANALNYIQGRVLPCCLPWQKIQCQHMFYSSVSCPPRVYFVLKKQMDQLLQR
FKNQKGVSYNLERNENGAFRIKFCANSPKAIADLRNPLEQLLKGKTVNHPSLTPTVLRSQ
DGIVLMKTVERETGTCIMYDRQNMIVKVFGPQKVVDAAEVKLVRAVLSFHENKKLEIRLR
GHNLPPGLMKEVVRRFGPDLQGLKEKVPGVEVILKTRYHILSVQGSNELKQKVEEIVSEV
GQSLGSGSAFEQSPEEAICPICLCELEEPFKLEECGHDFCRACLIEQCESAIRSRDGFPL
CCTKKGCGMPLLLVDLRSLLCRDKLEELFRASLGAFVASSEGAYRFCPTPDCPSVYEVSP
PNAVAGHFVCGACSAEVCTQCHLEYHPFVSCEQYREFKEDPNLSVVEWRLGKEHVKDCPS
CTHIIEKVDGCNHIACRCGVHICWVCLEPFESSEKCYSHLASSHHAIV |
NT seq |
5187 nt +upstreamnt +downstreamnt
atgaggccgagcacctcgagtcccccgttcccaccttcgcccgccggccaatggcgttgc
atctcatggccggccaccccccacccctgcccccagccgccgatgccgctgcgtccgttc
atggtgctcctcatccgcggtggcggtaagagggaccccacccggagggagttggacgcc
atcgacgctctgatcaactccggcccctcccggccaacggagttcttcgtctacgcttcc
ggccgcgtcgccgcgaagctcttctactggaaggagggagagaccatggattctgtcctc
ttcttctggcgccgccggctcgagggcgcccacctcctgcgccccaaggtggtcgtcgcc
gggacctccattcgctacgacagggaggaggaggcgggccgggtcagggccctcttcgtc
gcccacgcctacgacctccacaagggcgagtcggtgaagaggtgcgaacagaggattggg
gagatcaccgcggagatcaagaagctttcagcgcagctgggtggccggaaccggttgaag
gactacgagaaactctatgcgaagcggacgcagctacatacggaggaggagcaattgaag
aagaagatggaggaattcagagctgccatgcattgcattctctgtcatcttggagagccc
ctggaagaggttgggctggaaaaggaggctgctttcgagctgcttaagtttgcaggtggc
cgggactggggctgcattcactcggtcatggtgcgcgagtgccggaggctcgatgacaag
ttgccaatttatgcatgcagaaggcaaattttgagaaatatagttgccaatcaggtaatg
atcttgattggggagactggttctggaaagagtacacaattggtccaatatcttgctgat
tcagggctagtcactgatggatcaattgtgtgtactcaaccacgtaaaattgctgccata
tctttagcacaaagggttgcagaggaaagttatggatgctatgctgagaattatgtggtt
tcttatcccgcctactcatcatcccaggtgttcaattctaaggtgatgtttatgacagac
cattgtcttctgcaacactgtatgaatgggaccagtctggctggtatttcatatatcatc
atagatgaagctcatgaaagaagcttgaatactgatctgttgttggcattgataaagaga
aatctacttgagaggtatgatctaaggcttataataatgtctgctacagctgatgctagc
aaactttcagattacttctgtggttgcagcaccttttatgtactgggaagaaacttccct
gttgaagtcaaatatgttcctgatatatctgctaatgcttcttatgcttccattacaaaa
cattattctggtaattattcttcatatctttctgatgtggttaagatggtgaatgtgatt
cacaagacagaggacaacggtgctattcttgcattcttgacttcacagatcgaagtagaa
tgggcttgtgaaaagtttgatgacccctctgcaattgttttgccaatgcacggaaaactt
tcttgtgaagaacaaaatcgtgttttccaaagttaccctggaaaaaggaaaattgtattt
tccactaatgtagcagagacttcacttactattcaagacatcaagtacgttgttgattct
ggaatggtcaaagagagcaagtttgatcctagcagcggtatgaatgtgcttaaggtttgc
aggatcagccaaagttctgcaaatcaacgagctggtcgagcaggtagaacagcacctggc
aagtgctacaggctttactcagagcatgatttccaatcaatgcaaatgcatcaggagcct
gaaattcgtaaagttcatcttggaattgcttgcttgaggattcttgcattaggtgtaaag
aatgtacaggacttcgagtttattgatgccccaagtccaaaggcagttgagatagcaact
cagagtctaatccaattaggtgccataattagttatgaggatgcatttgaattaactgag
actggacactgcttgaccaaattgggtattgaaccacggcttggaaaaattattcttgat
tgcattagttgtggcttgatcaaagaaggcttggttcttgctgctgtaatgacaaatgct
agcagcatattttgcagagttggtagtcatgagcagaaacataaagcagactgcctgaag
gtgccattctgccatcatgatggggaccttttcactctgctttctgtttacaaggaatgg
gaagatgaaaatgaaagtaaaagcaaatggtgttggcagaacagcatcaatgctaagtca
atgagaagatgtcaggatactatgcaggaactggaaaactgccttagacatgaactcaaa
attgtcattccaaagtactggttatggaacccacataaacctagcaagcatgacaagtca
ttgaagaaggttatacttgcatcccttgctgaaaatacagcaatgtattctggatgtgat
caactaggttacaaagtggctttaacaggtcaaaatctgcccctgcatccttcatgttca
ttaatagtatatggccacaagccaagctgggtagtttttggtgaaattttgtcgatatcc
gatcaatatttgttttgtgtgactgctgttgactatgattgcttgtacaagattgagcct
ccattatttgacgtcttgcagttggagagccagaaaatgcatatgaatgtggttactgga
gttggtgttaatcttcttagaaggctatgtggcaaatccaataataacttacggtgccta
gtttcatgtgttcaagaagtttgcaaggacaaaaatatctgtattgatgttgacttcaac
aaaagagagattcagttatttgccccagaaaacaatatgggaaaagtttgttctattgtt
aatgatgccttggagttggaaagacgctggttaagggatgaatgcattgagaaatgcttg
tatcatggaaatcttggtgtttctccttttgcactgtttggttcaggtgctgaaattaag
catctagaacttcaaaagagatacctaactgtacagatatcccatccaagtgcacatact
ctagatgacaaggaacttctcatgatggttgataaacatggctatggaatagctaatttt
cataagcatgcagggagtggacaagggggatcggacttaaacaaatggggcaaggtaacc
tttctgagtcctgaggctgcagaagatgctgtagccagactaaatgatgtagaatttcat
ggttccttattgaaagttcttcctttgagggcaggagatcatactgtgttaccatttcct
ttagtaagagccaaaatttgttggccacgtagacctagcaagggagcagcgctgattgca
tgtgcaaaagaggatgctgaatttatagttaaagactgctctgcattgctcattggtgaa
aggtatgttaattgtgaagtcagtgtaaaatccaaggattgtgtttttgtgacaggaatt
caaaaagacattacagaaccagaaatatatgatgcatttataggagcaacagagaggaga
atccttggtgttcgtttgttgagaggagaagccatgaataacctcccaccgtctacttat
gcagaatttcttgttagagaaattgctcctttcgtgccaagcaagaattcaagtaacagt
ttctgggtcgaagtctttgactacgaaccaagagattggatggtgaaagctttaattaca
tttgatggcaatctacatttggaagcagcaaatgctttgaattacatccaagggagagtg
cttccttgctgtctaccatggcaaaagatacagtgccagcatatgttttacagctctgta
tcttgccctcctcgtgtttattttgttcttaagaagcaaatggatcaactacttcaaagg
tttaagaatcagaaaggtgtgtcttataatttggaaaggaatgaaaatggtgcctttcgg
ataaagttttgtgctaattccccaaaagccattgcagatttgaggaatcctctggagcag
ttgttgaaaggcaagacggtaaatcatccaagcctcactccaacagtgctgcgatcccag
gatggtattgtgcttatgaaaactgtggagcgagagactggaacttgcattatgtatgac
agacagaacatgattgttaaagtgtttggaccccagaaagtggtggatgcagctgaggtg
aagctggtgagagcagtactttcgtttcatgaaaacaagaaacttgagatccgacttcgg
ggccacaacctgcctccaggtttgatgaaagaggttgttcggaggtttggaccagacctt
caaggattgaaggaaaaggtccctggggtcgaggtgattcttaagacccgatatcatatc
ctctcagttcaaggaagcaacgagctgaaacaaaaggtggaagaaattgtatctgaggtg
ggtcagtctcttggaagtggcagcgcattcgagcaatcaccggaagaagccatttgcccc
atttgcctctgtgagttggaggagcccttcaagcttgaggagtgtggtcatgatttctgt
cgtgcctgtttgatagaacagtgcgagtctgccatcagatcacgggatggatttccattg
tgctgcaccaagaagggttgtggaatgcctctactgctcgtggacctgaggtctttgtta
tgtagagacaagttggaagaactattcagagcctccttgggtgcctttgtggcatccagc
gaaggggcctatcgcttctgtcccactcctgactgcccatcggtgtatgaggtctcccca
ccgaatgcagtggccgggcattttgtatgcggtgcctgctcagcagaggtctgcacgcaa
tgccatttggagtatcatccttttgtatcctgtgagcaatacagagagttcaaggaggac
ccaaacctctcggtggtggaatggcgactgggaaaggagcatgtcaaggactgcccctcc
tgcacccacattatagagaaggtggatgggtgcaaccacatcgcatgccgttgtggagtg
cacatctgctgggtgtgcttggagccatttgaaagcagtgagaaatgttacagtcacctt
gcttcatcacaccatgctatcgtatga |