Phoenix dactylifera (date palm): 103696445
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Entry
103696445 CDS
T03274
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 40-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103696445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103696445
03009 Ribosome biogenesis [BR:
pda03009
]
103696445
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103696445
Spliceosome [BR:
pda03041
]
Complex A
U1 snRNP components
U1 related factors
103696445
Complex B
103696445
Ribosome biogenesis [BR:
pda03009
]
Eukaryotic type
Pre-60S particles
Helicases
103696445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
Transformer
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103696445
NCBI-ProteinID:
XP_038988529
UniProt:
A0A8B9AYN3
LinkDB
All DBs
Position
12:12271731..12312984
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AA seq
563 aa
AA seq
DB search
MEAGAGSRQRQRRRPHGAFKCLYGGDPKGSQLREIERGSDIIVATPGRLNDILEMRKINF
HQISFLVLDEADRMLDMGFEPQIRKIVNEIPPHRQTLMYTATWPKEVRKIAGDLLKNPVQ
VNIGSVDELAANKSITQYVEVVLPMDKQRRLEQILRTQERGSRIIIFCSTKRPCDQLARS
IRNFGAASIHGDKSQGERDHVLYQFRTGEAPILVATDVAAQGLDIKDIRVVINYDFPTGI
EDYVHRIGRTGRAGATGVSYTFFSDQDWKHAADLVKVLEGANQHVPPEVRGMAARGGPLV
PRSRAGMSRWDSGSSGRWDSAGGRGMRDGLGGFGGRGDFGGGRGMRDRPGGFGGRGSRND
FFGGRGPRGRGFGSGGPGGWGRHDRGPHDRYISPDGRGRYDIRRGFGERNRERSYSRSPE
RVRTWGYDRGRSESRSWSRSRSRSRSRSRSRSWSKSSRSRSRSRSRSYDRYERPQGGDYD
RSPVTAAATTTAGFDPPPVAGLEAPPVPVFDSSLPLSGDMSPMSPGQNNGSFPITELTSQ
LPLPDFLESKASLELPPHQATDL
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atggaggcaggggcgggttccaggcagcggcagcggcggaggcctcacggagcattcaag
tgtctatatggaggagatccaaagggttctcagctaagagaaattgaacgaggatcagat
attatagtggcaacacctggtcggcttaatgacatcctggagatgaggaagatcaacttc
caccaaatttcttttcttgtgcttgatgaggcagaccgtatgcttgacatgggttttgaa
cctcagatacgaaagattgtgaatgagattcctccacacaggcagactctcatgtacaca
gcaacttggcctaaggaggtgagaaaaatagctggggatctactgaagaatcctgttcag
gtgaatattggcagtgttgatgaacttgctgcaaacaaatctatcacacagtacgtggag
gtggttttgcccatggataagcagaggcgcctggagcagattcttagaacccaagaacgt
ggatccagaatcatcatcttctgctcaacaaagaggccgtgtgatcagctggcccgtagt
attcgtaatttcggcgctgcttccattcatggcgacaagtctcagggtgaaagggatcat
gtcttgtatcaatttcgcacaggggaggcaccgattctagttgctactgatgttgctgcg
cagggacttgacatcaaagatatcagggtggtgattaattatgatttccccacggggatt
gaggattacgtccaccggattggacgaactgggagggctggggctactggagtatcttac
accttcttctcagaccaagattggaaacatgcagccgacctagtaaaagttcttgaaggt
gcaaaccaacatgttccaccagaggttcgggggatggctgcacgcggcgggccccttgtt
cccaggtctcgtgctggaatgagccgctgggattcaggtagcagtggcaggtgggactct
gcaggtgggcgaggaatgagggatggccttggtggctttggtggtcgtggggactttgga
ggtggccggggcatgagggatcgccctggtggctttggtgggcgtggcagtaggaatgat
ttctttggcgggcgcgggcctagaggccgtggatttggatcaggtggacctggaggttgg
gggcggcatgatcgtggcccacatgaccgatacattagtcctgatggacgaggccggtat
gatattcgcaggggatttggagagaggaacagagaacgcagttatagtcgaagtccagag
agagttcggacatggggttatgatagaggtaggagtgagagcaggagctggagccgaagc
cgaagccgaagccgaagccgaagccgaagccgaagttggtcaaagagcagcaggagtagg
agcaggagcaggagtaggagttatgacaggtacgagaggcctcagggaggagattatgat
cgctctcctgtgactgcagcagccacaaccaccgctggatttgatcctcccccagtggct
gggctggaagctccacctgtaccagtgtttgattcttctttacctctgtcaggtgatatg
tcgcccatgtcaccagggcagaataatggatccttccctataactgagctcaccagtcag
cttcccttacctgactttctggagtctaaagcctctctggagctgcctccacatcaagca
accgatctgtaa
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