KEGG   Phoenix dactylifera (date palm): 103696658
Entry
103696658         CDS       T03274                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03013  Nucleocytoplasmic transport
pda03015  mRNA surveillance pathway
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103696658
  09122 Translation
   03013 Nucleocytoplasmic transport
    103696658
   03015 mRNA surveillance pathway
    103696658
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103696658
   03041 Spliceosome [BR:pda03041]
    103696658
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     103696658
    TREX complex
     103696658
Spliceosome [BR:pda03041]
 Complex C
  Other components
   EJC/TREX
    103696658
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103696658
SSDB
Motif
Pfam: RRM_1 FoP_duplication Btz Kdo_hydroxy
Other DBs
NCBI-GeneID: 103696658
NCBI-ProteinID: XP_008776568
UniProt: A0A8B7BH58
LinkDB
Position
12:6599702..6609028
AA seq 242 aa
MASSLDMSLDDLIKNNKKSASAASGGRGRGRGTGGAARRVPNRAGNRLGPYSMGKAPDSA
WQHDMYANQTEGSLPPAVRVSAIETGTKLYISNLDFGVSNEDVKELFAEVGDLKRYSIHY
DRSGRSKGTAEVVFSRRADAVAAIKRYNNVQLDGKPMKIEIVGTNIATPAAVPQITNGAF
RSLNGPPKSAPGRGGSTGWPRGGGGRGRARGRGRGRGRGDQLSASDLDADLEKYHAEAMQ
IN
NT seq 729 nt   +upstreamnt  +downstreamnt
atggcgagctccttggatatgtctctcgacgacctcatcaagaacaacaagaagtcagcc
tccgccgcctccggcggccgggggcggggtagagggaccggaggcgccgcccgccgggtc
cccaaccgggctgggaaccgcctcgggccgtattcgatgggaaaggcgcccgactcagcg
tggcagcacgatatgtatgcgaatcagacggagggttctttgcctccagcggtgagggtt
tctgctattgagacaggcaccaagctctacatctccaacttggactttggtgtctccaat
gaggacgtcaaggaactctttgcagaggttggtgatctcaaacgttattcgatccattat
gatcggagtggaagatcaaagggaacggctgaagttgtcttttcaaggcgggcagatgct
gtagctgccataaagagatacaacaatgtacaacttgatgggaagccaatgaaaattgag
attgtaggaacaaatattgcgacacctgctgctgtgccccagattactaacggggctttt
agaagtcttaatggccctcctaaaagtgcacctggaaggggtggctctacaggatggcca
cgaggtggtggtggccgtggacgggcaagaggtcgtggacgaggtagaggccgtggtgat
cagctttctgcttcagatcttgatgctgacttggaaaaataccatgcagaggcaatgcaa
atcaactga

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