Phoenix dactylifera (date palm): 103697068
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Entry
103697068 CDS
T03274
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103697068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103697068
03009 Ribosome biogenesis [BR:
pda03009
]
103697068
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103697068
Spliceosome [BR:
pda03041
]
Complex A
U1 snRNP components
U1 related factors
103697068
Complex B
103697068
Ribosome biogenesis [BR:
pda03009
]
Eukaryotic type
Pre-60S particles
Helicases
103697068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
103697068
NCBI-ProteinID:
XP_008777060
UniProt:
A0A8B7BHT0
LinkDB
All DBs
Position
1:complement(3392057..3405389)
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AA seq
1199 aa
AA seq
DB search
MATAEAAPASLGPRFAPEDPTLPKPWKGLIDGSTGLLYYWNPETNVTQYEKPATSASPLP
TGPPSSASMPKLAQIPTARTLPPNVTVSQQPGQQMVQQAGQQVQQQHPSQQIFQQAGQLT
QQQQHLSQQLPLQQSGQQMPLQQLGQQMACQQSQQMPYQQLQQMSNQQVTQQQNAQQFSH
MQLQQMPYQQISCLPGQLMPHPQGQQPQGLQFSSYQQGQQSQGLQAPYQLGQQPQVPQIP
HEQQMQESHMMLQRGQQLQGPQIPHSQGLQMVPQPLQYPHGLQIARRQGQQSHGSHNGNQ
RGQQTQGQQVGFPRVEEAARLEGKQAGLSLPMDQQSSLISSNHHLPVTPPQVNISLAGGR
SIQPQKQLGGASPVTAQHNASSLQLQLAGIDPSYQQQQTSGCTIPNQPGHTVIRPPMGLK
TGYDDDQHERGRNEFNSSRRMEEPMMLPQQPKHANLPLAWSQQDMKMGHQFIPPGHSGGL
NMLPQHPMPNMYSHAAFPDPAPLGPSEGMFGSSDFPNISAADAYCQHHEVTAMGDNVPAP
FMTFETTGFPPEILREMHSAGFLSPTPIQAQTWPVALQNRDIVAIAKTGSGKTLGYLIPA
FIHLRRCGNNSRFGPIVLVLAPTRELASQIQEEAIKFGHSSRVSCTCLYGGAPKGPQLRE
IERGADIIVATPGRLNDILEMKKIDFRQVSFLVLDEADRMLDMGFEPQIRKIVNEIPPHR
QTLMYTATWPKEVRKIAGDLLKNPVQVNIGSVDELAANKSITQYVEVVSPMDKQRRLEQI
LRSQERGSKIIIFCSTKRLCDQLAHSMRNFGACSIHGDKSQGERDHVLQQFRTGKAPILV
ATDVAARGLDIKDIRVVVNYDFPTGIGDYVHRIGRTGRAGATGVSYTFFSDQDRKYAADL
VKVLEGANQHVPPEVRNMVAHGGPLFPRPRAGMSRWDLGGSSKWDSGGGRGVRDGPXGGF
GGRGSFGGGRGMRDRPGGFGGRGGRNDFYGGHRPRGRGFGGPGGDRGRHDRVPYDRYMKP
GGQGRYDARRGFGERSRDRGYSRSPERARTWGYDRSRSESSRSRSRSRSRSRSRSWSRSN
KSWSRSRSRSRSRSRSRSYDRYERPGGQEYDHSLVPAAPIALPGFEPPEVAGFEVTPVPE
FEASLPLSGDMSPMSPGQDNGSFPGSELTGELPQPDGRRLDFPESGASLELPQQHAADL
NT seq
3600 nt
NT seq
+upstream
nt +downstream
nt
atggcaacagcagaggcggctccagcttcactgggcccacgctttgcacctgaagacccg
acactcccgaagccttggaaagggttgattgatggaagcactggtctcttgtactactgg
aaccctgaaacgaatgtcacccagtatgagaagccagctacctcagcctctccactgcca
actggtcctccttcctcagcctccatgcccaagttggcccagatacccacagctcgcacc
ttacctcctaatgtcactgtatcgcagcagcctggccaacaaatggttcaacaggcagga
cagcaagtgcagcaacagcatccaagtcaacagatttttcagcaagcaggccagctaact
caacagcagcagcatctgagccagcaattgccgcttcagcagtcaggtcagcagatgccg
cttcagcagttaggtcaacagatggcatgccagcaaagtcagcagatgccatatcagcag
ctgcagcaaatgtcaaatcagcaggtcacacagcagcagaacgcacagcagttctcacac
atgcagctgcagcaaatgccatatcagcaaatttcttgccttccagggcagcttatgccg
caccctcagggacagcaaccacaagggctgcaattttcttcttatcagcaggggcaacaa
tcacaagggctgcaggcgccataccagctggggcagcaaccgcaggtgccacaaattcct
cacgagcaacaaatgcaggagtcacacatgatgctacaaagggggcagcaactgcagggt
ccacaaatcccgcactcccagggccttcagatggtgccccagccgcttcaatacccacat
gggctacaaattgcacgtcggcagggacaacaatcacatggttcacataatggaaaccag
cgtgggcagcagacacaaggacagcaagttgggttcccaagggtggaggaagcagctcgc
ctagagggaaagcaggctggtctttctttgcctatggaccaacaaagcagtctgatatct
tcgaatcatcaccttccagtcacgcctccgcaggttaatatttctcttgcaggaggacgt
tctatccaaccacagaaacagcttggtggggcatctcctgttactgcacagcataatgct
tcatcgcttcagttgcagctggcgggcatagacccgagctatcagcaacagcaaacaagt
ggttgcacaattccaaatcagccggggcacacggtgatccgtccgcctatgggattgaaa
acaggttatgatgatgatcaacatgaaagagggagaaatgaatttaattcttcccgaagg
atggaagagccaatgatgcttccacagcaaccaaagcatgcaaatcttccccttgcatgg
agtcagcaggatatgaaaatgggtcatcagtttattccaccaggtcattcaggcggactg
aacatgttgccacagcatcctatgccaaacatgtacagtcatgctgcctttcctgatcca
gctcccttaggaccgtccgaaggaatgtttggctcatcagattttccaaatatttctgca
gctgatgcatactgccagcaccacgaggttaccgcaatgggcgacaatgttcctgcacca
ttcatgaccttcgagaccactggcttccctccagagattcttagagagatgcattcagct
ggatttttgtctcccacgccaatacaggcgcagacatggccagttgcactacaaaacaga
gacatagtggccattgccaagacaggttcagggaagaccctgggctatcttattcctgca
tttatccatttgagaagatgtggaaataattctcggttcggtccaatagtgttagttttg
gctccgactcgggaacttgcttcacaaatacaagaagaggcaatcaagtttggtcattct
tctagagtttcttgcacgtgtctatatggaggagctccaaagggtcctcagctaagagaa
atagaacgaggagcagatataatagtggctacacctggtcggcttaatgacatccttgag
atgaagaagatcgatttccgtcaagtttcttttcttgtgcttgatgaagcagaccgtatg
cttgacatgggctttgaacctcagatacgaaagattgtgaatgagattcctccacacagg
cagactctcatgtacacagcaacttggcctaaggaggtgaggaaaatagctggggatcta
ctgaagaatcctgttcaggtgaatattggcagtgttgatgagcttgctgcaaacaagtcc
attacgcagtatgtggaggtggtttcgcctatggacaagcagaggcgcctggagcagatt
cttagaagccaagaacggggatccaaaatcatcatcttctgctcaacaaagaggctgtgt
gatcagctggcccatagcatgcggaattttggtgcttgttccattcacggtgacaagtct
cagggtgaaagggatcatgtcttgcaacagtttcgcaccgggaaggcaccaattctagtt
gctactgatgttgctgcccggggacttgacatcaaggatatcagggtggtggttaattat
gattttcctacagggatcggggattatgtccaccggattggacgaactgggagggctggg
gctacaggagtatcgtacaccttcttctcagaccaggatcggaaatatgcagctgatcta
gtaaaagttcttgaaggtgcaaatcaacatgttccaccagaggttcgcaatatggtcgcg
catggtggacccctcttcccaaggcctcgtgctggaatgagccgctgggatttgggtggc
agcagcaagtgggactctggaggtgggcggggagtgagggatggccctnntggtggcttt
ggtggtcgtgggagctttggaggtggtcggggcatgagggatcgtcctggtggctttggt
gggcgtggcggtagaaatgatttctacggtgggcataggcccaggggtcgtggatttggt
ggaccaggtggagataggggtcggcatgaccgtgtcccatatgaccgatatatgaaacct
ggtggacaaggccggtatgatgctcgcaggggatttggagagaggagcagagaccggggt
tatagtcgaagtccagagagagctcggacatggggttatgatagaagcagaagtgaaagc
agtaggagcaggagccgaagtagaagccgaagccgaagtaggagttggtcaaggagcaac
aagagctggagcagaagccgaagcaggagccggagcagaagtcgaagcaggagctatgat
aggtatgagaggcctgggggacaggagtatgaccactctctagtacctgcagcacccata
gccttgcctggatttgagccaccagaagtggctgggtttgaagttacaccggtgcccgag
tttgaggcttctttacctctatcaggtgatatgtctcccatgtcaccaggccaggataat
ggatcgttccccggaagtgagcttaccggtgaacttccacagcctgatggcaggaggctc
gactttccggagtctggagcctccctagaactgcctcaacagcatgcagcggatttgtaa
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integrated database retrieval system
