Phoenix dactylifera (date palm): 103697553
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Entry
103697553 CDS
T03274
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103697553
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103697553
03019 Messenger RNA biogenesis [BR:
pda03019
]
103697553
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103697553
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103697553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
103697553
NCBI-ProteinID:
XP_008777659
UniProt:
A0A8B7BII7
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MEMESSRRSAMDRSREPGLKRPRLVEDDRGVSASRDRPFPPPRAGSQPLGPRLRAGGERE
RERVEREDALWGESYQQQQELVAQYKTALAELTFNSKPIITNLTIIAGENLHAAKEITST
ICANVLEVPSEQKLPSLYLLDSIVKNIGREYIKYFAARLPEVFCRAYKQVDSYVHPSMRH
LFGTWKGVFPSATLQIIENELGFSAIVNGSSGAASSRPDSQTQRPPYSIHVNPKYLEARQ
RLQQSTRAKEIINDDISGAVSSIDAERSDKTAIIGSTRQWKNVPNRMPNMRPQRELINNP
IHERKEFRDHEFSSDIARQSDLGVGRVSERLKERDVLDKPYHGAGIKASEMRISRSNGFD
VNRAYGIYRASGSARVDSQLPSVHLNNTDRSIQLTSENWKNSEEEEYMWDDMNSRAMDSE
STDSLIKGGWSSNDANKPASLQKGKGIPSASEHLGSYLNKIDSLSQLRKTSAREGRVPLL
KEPEVHLPQPHAKHDAESRVGVGTSADSLYMGRDVLEHPTSIWAPHEVSPSMIGLNHTSS
RISSQSEGQPMSFSGGLSTSMGSSLVSGSSGMLGQQRQQLLQPPSPSARSPPSSAVLQHQ
KSHSSTDHDRLRSNSFFPMVQKPAHVPEQSSQVPQASVTQDSCTISAQNHTQNSHTPLNS
QSPPSHPSQHLQNSSASASARFGQRRHHLPFMQQSEPSLSVQETETQSQTSHQTKKSPSL
PLSFGSHQIELSGTNNSNNPAVEIGGQPNTTNLLAAIMNTGLVPNNTMSNSKNLNIQPPL
PSGPPPILVATSSVPSVTPSISLPLSHGNISALVSPSTRPILPPLPPGPPPRSSLVRTSK
ETSNIAGTTTNPLSSLLSSLVEKGLISSPAAELPAATSVQLPNELANQSSGFASSTSKCE
LSTLDSSAIPSVAAKEPSATESDAPASAAMLQSTTRLNDLLGIEFKPEIIRKFHPEVISS
LFDDLEHRCNICGLRFQIKEQFSGHLDWHGSMKSEVSSLNRVSRKWYVNLSSWLSGCVAP
QSGPVESTISLDEIVPTYGQYEPAVPADESQCLCALCGEPFEDVYSAERDEWMYKGTVYL
DVPKKQSDMEKMDESAGQVPIVHASCISRSSADNMEDTND
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atggagatggagagctcccgcagatccgccatggaccgctcccgagagccgggcttgaag
agacctcgattggtggaggacgaccgcggcgtctccgccagccgagaccgtccatttccg
ccgccgagggccggcagccagccgctgggcccgaggctgagggccggcggcgagagggag
agggagagggtggaaagagaggacgcgctgtggggagaatcttatcagcagcagcaagag
ctcgtggcgcagtacaagacggcgctggccgaactgacgttcaattcaaagcctatcatc
acaaatctaaccatcatcgccggagagaatctccatgctgctaaggaaatcacctccacc
atctgcgccaatgttctcgaggttcccagtgaacagaagttgccatccctttatcttctt
gatagtatcgtgaagaatattggaagagagtacattaaatattttgctgcaaggttacct
gaggtattttgcagggcttataaacaggttgattcttatgtacatcctagtatgcgacat
ctttttggaacatggaaaggagtcttcccctctgctacacttcagataattgagaatgaa
cttggcttctcagctatcgtcaatggttcatctggagctgcatcatcgaggcctgattct
cagacacagcgtccaccatacagcattcatgtgaatccaaaatatttagaagcaagacag
cgccttcaacagtcaactagggcaaaggaaataatcaatgatgacatcagtggtgcagtt
agttcgattgatgcagagaggtctgacaaaacagcaattattggaagcacaaggcaatgg
aaaaatgtcccaaacagaatgcctaatatgcggcctcaaagagaactgataaacaatccc
attcatgagagaaaagaattcagagatcatgagttctcttctgatattgcacggcagtcg
gatcttggagttggaagggtaagtgagaggcttaaagagcgagatgtacttgataaacca
tatcatggtgctggcataaaagcttctgaaatgcgcatcagcagaagcaatggttttgat
gttaatcgtgcatatggaatataccgggcatctggatctgcacgcgtagatagtcaactg
ccttcagttcacctgaacaatacagatagaagtatccaactaacatctgagaactggaag
aattccgaggaggaagagtatatgtgggatgacatgaattccagagcaatggattctgaa
agtactgatagcctaataaaaggtgggtggagtagtaatgatgcaaataaacctgcaagt
ttgcagaaaggcaaggggataccttcagcgtctgagcatctaggctcttatttgaacaaa
attgactctttatctcaattgagaaagacctctgcacgggaaggcagagttccactactt
aaggaacctgaagtgcaccttccgcagccccatgccaagcatgatgctgagtcaagagta
ggtgtgggaacttcagcagattcactgtacatggggcgagatgttttggagcatcctacc
tccatttgggccccacatgaggtttcaccctcaatgattggattgaatcatacaagctca
agaatttctagtcagtctgaaggacaacctatgtcttttagtggtggtttatctacaagc
atgggttcatctttagtttcaggatcaagtggaatgcttgggcagcaaagacagcaactg
ctgcagcctccatcaccatctgcacgttcacctccatcttctgcagtccttcaacatcag
aaatcacacagttcaactgatcatgatcgtcttcgatctaattccttctttcccatggtt
caaaaacctgcacatgttccagagcagtcaagtcaagtcccacaggcatcagtaactcag
gattcttgtactatttctgctcaaaatcatacacagaattctcatactccattgaactca
cagtcacccccatcacatccttctcaacacctgcaaaactcgtctgcttctgcttcagca
cgttttggtcagcgtaggcatcaccttcccttcatgcagcaatcagagcctagtctatca
gtgcaagagacagaaacacagtctcaaacttcccatcagaccaagaaatcaccgtctcta
cccctgagttttggatctcatcagatagaactttctggaacgaacaactcaaataatcct
gctgttgaaattggtggccaacctaacacaactaatttattggctgctattatgaacact
ggacttgtaccgaacaatacaatgagtaattccaagaacctgaacatacagcctccccta
cctagtggacctcctcctattctagttgcgacatcatctgttccttctgtcactccctca
atatcgctaccattgtcccatggcaatatatctgctcttgtgtcaccctctacgagaccc
attcttcctcccctaccacctggacctccacctcgctcatccttggtgcgtacttccaaa
gagacctcgaacatagctggtaccactacaaatccactttcaagtcttctgagctcatta
gttgaaaaaggtttgatatcctcaccagcagcagaattaccagctgcaacttcagttcag
ctgcctaatgaactggcaaatcagagtagtggctttgctagcagcacctcaaaatgtgaa
ctttcaaccttagatagttcagccattccttcagtagcagcaaaagagccttctgccact
gaatcagatgctccagcaagtgctgctatgttacaatccactacaagattgaacgacctt
ttaggcattgagttcaagccagagatcatacggaaatttcatcctgaggtgatcagtagc
ctctttgatgacctagagcatcggtgcaacatatgtggcctaagattccaaattaaagag
cagttcagtggtcacttggattggcatggctcaatgaagtctgaagtgagcagtttgaac
agagtttctcggaagtggtatgtgaatttgagtagttggctctctggatgtgtggcacca
caatctgggccagtagagtcaaccatttctctggatgagattgtcccaacatacgggcaa
tatgagccagcagttcctgcagatgaaagccaatgcctatgtgctttatgcggagaacca
tttgaagatgtttattctgccgaaagggatgaatggatgtacaaaggaacagtgtatttg
gatgtaccaaagaagcaaagtgatatggaaaaaatggatgagtctgctggacaggttcct
attgtgcatgccagctgtatatcaagaagctcagctgataacatggaggatacaaatgac
tag
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integrated database retrieval system
