Phoenix dactylifera (date palm): 103698913
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Entry
103698913 CDS
T03274
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I-like isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103698913
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103698913
03019 Messenger RNA biogenesis [BR:
pda03019
]
103698913
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103698913
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103698913
U7-dependent histone pre-mRNA processing factors
103698913
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B
Lactamase_B_6
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF8084
Motif
Other DBs
NCBI-GeneID:
103698913
NCBI-ProteinID:
XP_038989573
UniProt:
A0A8B9B094
LinkDB
All DBs
Position
14:10578439..10591150
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AA seq
696 aa
AA seq
DB search
MASAMTGGQVWALKRRESTATREGDRLTITPLGAGNEVGRSCVYMSYKGKTVLFDCGIHL
AYSGMAALPYFDEIDPSTIDVLLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRL
LLSDYVKVIKVSVEDMLYDEQDILRSMDKIEVIDFHQTLEVNGIRFWCYTAGHVLGAAMF
MVDIAGVRVLYTGDYSREEDRHLRAAEIPQFSPDICIIESTCGVQLHQPRLIREKRFTDV
IHSTVSQGGRVLIPAFALGRAQELLLILDEYWSNHAELHNIPIYYASPLAKRCMAVYQTY
INAMNERIRNQFANSNPFDFKHISPLKSIENFADVGPSVVMASPGGLQSGLSRQLFDKWC
TDKKNACVIPGYVVEGTLLKTIINEPKEVTLMNGLTAPLNMQVYYISFSAHADFAQTSTF
LKELMPPNIILVHGGANEMARLKQKLITQFADRNAKIISPKNCQSVEMYFSSKKMAKTIG
RLADKTPEVGETVSGLLVKKGFTYQIMASDDLHVFSQLSAANITQRISVPYSGAFGVIKH
RLKQIYESVESPSEEPDVPTLIVHERVTIRQESENYVTLQWSSDPISDMVLDSVVAMILN
ISREGPKGTAVAEAKKTEEETEKMAQKVIYALFVSLFGDVKIGEEGTLVVTVDGDVARLD
GKNGEVECENEGLKERVKTAFGQIQSAVRPIPPSAS
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccatgaccggcggccaggtctgggcgctcaagaggcgggaatcgacggcg
acgagggaaggggatcggctcaccatcaccccattgggcgccggcaatgaggtggggcgc
tcctgtgtgtatatgtcctacaaagggaagaccgtcttgttcgactgtggaatccatcta
gcgtactcggggatggctgccttgccatattttgatgagatcgatccttcgactatcgac
gtgcttcttgtgactcactttcaccttgatcatgctgcctcattgccatactttctggag
aagactactttcaagggccgggttttcatgacgcatgcaactaaggctatttacaggttg
cttttgtcagattatgtgaaagtgatcaaagtttctgttgaggatatgctgtatgatgag
caagatattcttcgttcaatggacaaaattgaggtcatagacttccaccagacacttgaa
gtgaatggtattcgcttttggtgctatactgctggtcatgttctgggtgctgccatgttc
atggttgatattgctggtgtccgggttctatacaccggtgactactctcgtgaagaggac
cgccatctccgagctgctgaaattccacaattctcccctgatatctgtatcattgagtcc
acctgtggtgtccagctccaccagccccgtcttatccgagagaagcgctttacagatgtc
atccactcaaccgtctcccaaggtggccgtgtgcttattcctgcttttgcccttggcaga
gcccaagaactcctcctcatcctggatgagtactggtctaaccatgcagagctccataac
attcccatctactatgcctcccctcttgccaagagatgcatggctgtctaccagacctat
ataaatgccatgaatgagaggattcggaaccagtttgcaaactcaaacccattcgatttt
aagcacatttctccgttgaagagcatagagaattttgctgatgtgggtccatcagtggtt
atggcaagtccaggtggcctccagagtgggctttctagacaactgtttgataaatggtgc
acagataaaaagaatgcttgtgttattcctgggtatgttgtggaagggacactcttaaaa
accatcatcaatgagccaaaagaagtcaccctaatgaatggcctcactgctcctctcaac
atgcaggtatattacatctccttctcagctcatgcggatttcgcacagacaagcaccttc
ttgaaggagctcatgcctcccaatataattcttgtccatggaggagccaatgagatggca
aggcttaagcagaagcttataacccaatttgctgataggaatgctaagatcatttccccc
aagaactgccagtcagtggagatgtattttagttccaaaaaaatggccaaaacaattgga
aggctggctgacaagacaccagaagttggggaaacagtcagcggcttactggtcaagaag
ggctttacatatcagataatggcatcggatgatctccatgtcttctcacagctgtccgca
gcgaatattacccagaggatctccgtcccttattctggtgctttcggagttataaagcat
aggttgaagcagatatatgagagtgtggagtccccatcagaagagcctgatgtaccaaca
ttgattgtgcatgaaagggtgacgataaggcaggagtcagagaactatgtgacattgcag
tggtcatcggaccccataagcgacatggttttggactctgtagtagctatgatcttgaat
attagccgagaaggtccaaaggggacagcagttgcagaggccaagaagacagaggaggaa
acagagaagatggcgcagaaggtaatatatgctctttttgtatccttgtttggggatgtc
aagattggagaggaaggaacactggttgtgactgtcgatggggatgtggcgcgtctggat
ggcaagaatggtgaagtagaatgtgagaatgaggggttgaaggagagagtaaagacagca
ttcggacagatacaaagtgcagtgagaccaatcccgccatcagcatcttga
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