Phoenix dactylifera (date palm): 103699000
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Entry
103699000 CDS
T03274
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103699000
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103699000
Spliceosome [BR:
pda03041
]
Complex B
Other components
Prp19-related factors
103699000
Complex C
103699000
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
RRM_YTH1
zf-CCCH_3
RRM_occluded
zf-CCCH_4
RRM_3
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
103699000
NCBI-ProteinID:
XP_038983742
UniProt:
A0A8B9ADB4
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Position
7:complement(499468..505312)
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AA seq
479 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPKSDVNREYFAE
EHDRRARAGIDYESSYGKAHPNDTILKLQRTTPYYKRNRAHVCSFYARGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVALKLLSKAGEMPSLSPPEDESIKTLYVGGLDARIT
EQDLRDHFYAHGEIESIRMVLQRACAFVTYTTREGAEKAAEELVNKLVVKGLRLKLMWGK
PQASKPEGEVPEDDVTKQGLMSLGGMLPRAVISQQQTNQQPQPPGTQDQQQPPLHYFNIP
APPPVERTFYPSMDPQRMGALVPSQEASDNKGGSEKQPQQQGLLRAPNSSGQAYPVLPPH
LQSQYPQYYPPYGYMAPPRPPYQQQYPPYQSMMAPPPPPPAPPAMQQYPPGAPGSSSQG
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggcgcatcggctgctgagagacgcgcaggccgacggatgggagcgctccgactttccc
atcatctgcgagtcctgcctcggcgacaatccttacgttcgaatgacaagggcagattat
gacaaggagtgcaagatctgcacacgaccatttacagtcttcagatggaggccgggtcgt
gatgcaagatacaaaaagacggagatctgccagacatgctgtaagctgaaaaatgtgtgc
caggtctgcctcttggatcttgagtatgggttgcctgttcaggttcgggatactgccttg
gctatcaattccaatgatgctatcccgaagagcgatgtgaatagggagtactttgcagaa
gagcatgaccgcagggctagagctggcatagattatgagtcttcatatggaaaggctcat
ccaaatgacaccattttaaagcttcaaaggacgacaccatattacaaaagaaatcgggca
catgtctgtagcttttatgcacgcggtgaatgcacacgtggtgccgaatgtccatatcgg
catgagatgcctgttactggggaactatctcagcagaacataaaagatcggtattatgga
gtgaatgacccagtcgctctgaagcttttaagcaaggcaggtgaaatgccatctctgagt
cctccagaagatgagagcataaagaccctgtatgttgggggccttgatgctcgaatcacc
gagcaggatttgagggatcacttctatgcccatggtgagattgagtcaatcaggatggtg
ctccaacgagcatgtgcctttgtgacatacacaacaagagaaggagcggaaaaagcagca
gaggagcttgttaacaagctggtcgttaaaggattgcgtctgaagctgatgtggggaaag
ccacaggcatccaaaccagagggagaggtgccagaggatgatgtcacaaagcaagggctc
atgtcgcttggagggatgcttccaagggctgttatatcgcagcagcaaactaaccagcag
cctcaaccgccaggcacacaggaccaacagcagccaccactgcactacttcaacattcca
gcaccgcccccagtggagcgaaccttctacccctcgatggatccccagaggatgggtgct
ctggtcccgtctcaggaagcgagtgataacaaagggggatcagagaagcagccacagcag
cagggactgctgcgagctccgaatagctcagggcaagcgtaccctgtcttgccgccacat
cttcagagccagtacccacaatattatccaccatatggttacatggccccgccacggcca
ccttatcaacagcagtatcctccttaccagtcaatgatggctccacccccacctccacct
gcaccacctgcaatgcagcagtaccctccaggtgcacctgggtcatcttctcagggctga
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