Phoenix dactylifera (date palm): 103701431
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Entry
103701431 CDS
T03274
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103701431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103701431
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103701431
Spliceosome [BR:
pda03041
]
Complex C
Other components
Step II factors
103701431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
SLFN-g3_helicase
AAA_19
AAA_30
Flavi_DEAD
AAA_24
T2SSE
AAA_7
nSTAND3
AAA_16
AAA_14
NB-ARC
ABC_tran
TrwB_AAD_bind
TsaE
Motif
Other DBs
NCBI-GeneID:
103701431
NCBI-ProteinID:
XP_008781694
UniProt:
A0A8B7BMQ0
LinkDB
All DBs
Position
1:complement(17067653..17093746)
Genome browser
AA seq
1273 aa
AA seq
DB search
MEGEGKVVDLNRTNDVLEPDTGIKGGLCVPSKDKLLYRPPERKSTLGLDMLACAKRGSKG
DGFKVPAERQISAISSIDMDEDVIVEKSGSSIIEDSTSGSPRGESGRASRRYRGTGAEEK
SCSESTVTHEGEGGYTSRRQRANETPHREASTPRSSRSFQSYSPDYDEENNKHRYHSDRG
YFKRKDEKGRPSHQQKDATDRARKRNRHEHVSRTPVRSDWDDGRWEWEDTPRRDSRDSYS
MSRRDLRPSPSPMLAGASPDARLVSPLLGGFTPRSAASPWDSISPSPIPIRAAGSKKSSD
SRQSGKSHMPTFSLSASSEGHGADRDSVDQDSYRDYEITEEMRQEMDYNADRAWYDREEH
NTMFDTDSSSFFLGNDTSYQKKEAELAKKLTRKDGTLMTLSQSKKLSQLTSDNAQWEDRQ
LLRSGAVRGTEVQTEFEDEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPIKDPTSDMA
IIARKGSVLVREIHEKQSMNKSRQRFWELAGSKLGDILGVQKTAEQVDADTAVVGDEGEV
DFKEDAKFAQHMKSKGEAVSDFAKSKSLSQQRQYLPIYSVREELLQVVRENQVIVVVGET
GSGKTTQLTQFLNEDGYTITGIIGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFED
VTGPNTIIKYMTDGVLLRETLKDSDLDKYRVVIMDEAHERSLSTDVLFGILKKVVARRRD
FKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKTPCEDYVEAAVKQVMTIHIT
SAPGDILIFMTGQDEIEATCYALAERMEQLTASTSRAVPKLLILPIYSQLPADLQAKIFQ
KAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQ
RAGRAGRTGPGTCYRLYTETAYQNELLPNPVPEIQRTNLGNVVLLLKSLKIENLLDFDFM
DPPPQENILNSMYQLWVLGALNNVGGLTDIGWKMVEFPLDPPLAKMLLMGEQLGCINEVL
IIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGDWCNDHF
LHVKGLRKAREVRSQLLDILKSLKIPVTSCGMDWDVVRKAICSAYFHNSARLKGIGEYVN
CRNGMPCHLHPSSALYGLGYTPDYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVK
ESDTSMLEHKKKQKEEKTAMEEEMENLRKEQAEMERTSKEREKEKRARQQQQVVMPGLRQ
GSSTYLRPKKMGL
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atggagggagaggggaaagttgttgacctgaatagaacaaatgatgtcttggaacctgat
acaggcattaagggagggctctgtgtgcctagcaaggacaagttactatatagacctccc
gagagaaaatcaactttaggtttggatatgcttgcctgtgcgaaaagaggatcaaaaggt
gatggctttaaagttcctgccgaaagacaaatttcggccattagttctatagatatggat
gaagacgtgatcgtcgagaagtctggttcttctataatagaagattctacaagtggttca
cctcgtggtgaaagcggtcgtgcttctcgtcgctaccgtggaactggtgctgaagagaaa
tcatgctcggaatctactgtaacacatgaaggtgaaggaggatatacttctcgcagacag
cgagcaaacgaaactccacaccgtgaggcctccactcccagaagttcccggagttttcag
tcctatagtcctgattatgatgaggaaaacaacaagcatagatatcatagtgatagaggg
tatttcaaaagaaaagatgagaaggggagacccagccatcagcagaaggatgctacagat
cgtgcaaggaaaaggaatcggcatgaacatgtttcaagaacacctgttagatctgattgg
gatgatgggaggtgggaatgggaagatactccacgtcgagatagtcgagatagttattct
atgtctcgtagggacctgcgtccttcaccatctcctatgttggcaggggcatcccctgat
gcacgcttagtttctccattgttgggtggcttcacacctcgttctgcagcttctccatgg
gacagtatctctccttctccaatccctatacgtgctgctggctcaaagaaatcttcagac
tcacgtcaaagtggaaaatcacatatgcctactttttctctttcagcaagttctgagggc
catggcgctgatcgagactctgtagatcaagactcttacagagattatgagatcactgag
gagatgcgtcaagaaatggattataatgctgatcgtgcatggtatgacagagaagaacac
aacacaatgtttgacactgatagctcatcattctttcttggaaatgacacttcttaccag
aagaaagaggcggagttggcaaagaaattgactcgcaaggatggaactctgatgacactt
tcccagagcaaaaagttatcacagttaacttccgataatgctcagtgggaagacagacag
cttttgagatctggagctgttagaggaacagaggtgcagacagagtttgaggatgaggat
gagcgcaaagttattcttctggttcatgatacaaagcctcctttcttggacgggagggtg
gtatatacaaagcaggctgaacctgtgatgcctataaaagatcccacatcagacatggct
ataattgcacgcaaaggctctgttttagttagagagattcatgaaaaacagagtatgaac
aagtcacgccaacgattttgggagctagctggatcaaaacttggtgacatattaggggtt
cagaagacagctgagcaggttgatgcagatactgcagttgtaggagatgagggagaagtt
gattttaaggaggatgcaaagtttgcacagcacatgaaaagcaagggtgaagcagtcagt
gattttgccaagtcaaaatctctttcacagcaaagacagtatctcccaatatattctgtc
cgtgaggaattgttgcaggtagtccgtgaaaatcaggtgattgttgttgttggagaaact
ggttctggaaagacaacacaactgacacagtttcttaatgaagatggatatactattact
ggcattattggttgtacacaacctagacgtgtagcagccatgagtgttgcaaaacgagtc
agcgaggagatggagacagagttaggtgataaagttggctacgcaattcgctttgaggat
gttactggtccaaatactataataaagtatatgacagatggagtacttctgcgtgaaaca
ttgaaggactctgaccttgacaaatatcgagttgttatcatggatgaagcacatgagaga
tcgctaagtactgatgtgttgttcggcatactaaaaaaggtggttgctcggagacgtgac
ttcaagctcattgtgacgtctgcgacattaaatgctcaaaagttctccaatttctttgga
agcgtgccaattttccacattcctgggaggacatttcctgtgaacatcttgtatagcaaa
acaccttgtgaagactatgtagaagctgcagtgaagcaggtgatgactatccacatcacc
agtgctcctggtgacatcctcattttcatgacaggacaggatgagattgaagcaacctgc
tatgctcttgccgaacgtatggagcagctgactgcatccacaagcagggcagtccccaag
cttctcatactgcctatctactctcagctgccagctgacctgcaagcaaagatttttcag
aaagctgaagatggggctcgcaaatgcattgttgcaaccaacattgctgagacatcactt
acagtggatggtatcttctatgtcatagacacagggtatggtaagatgaaggtctacaat
cctaggatgggtatggatgctcttcaagtgtttccagtcagccgagcagctgctgaccag
cgggctggacgagcagggaggacaggccccgggacatgctatcggttgtacacagagaca
gcataccaaaatgagttgctccccaaccctgtgcctgagatccagagaactaatctgggg
aatgtggttttgttgctcaagtccttaaaaattgaaaatctcttggattttgactttatg
gaccctcctccgcaagagaacattctgaattccatgtatcagctctgggtgttgggtgca
ttgaataatgtgggtggtcttacagacataggctggaaaatggttgagttccctttagat
ccgcctcttgccaaaatgttgttgatgggagagcagcttggatgcataaacgaagtgttg
ataatcgtgtctatgctctcggtaccatcggttttctttcgaccaaaggaccgagcagaa
gagagtgatgcagcaagggagaaattctttgtcccagaatctgaccacctgactctttta
aatgtttaccagcagtggaaagcaaaccagtatcgtggggactggtgcaatgatcacttc
ttgcatgtgaaagggcttcggaaggccagagaagttcggtcccagctactagacatactc
aagtccttgaaaattcctgtgacttcatgtgggatggattgggatgtggtgaggaaggca
atctgttctgcatatttccacaattctgccaggctaaaaggcattggtgagtatgtcaat
tgccggaatggaatgccttgccatctgcatcccagcagtgcgctatatggacttggatat
actccagactatgtggtttatcatgaactcatactgacaacgaaagagtacatgcaatgt
gcgaccgcagttgagcctcagtggctggcagagttggggcccatgtttttctctgttaag
gagtcggatacatccatgctcgagcacaaaaagaagcagaaggaagagaagacagccatg
gaggaggagatggaaaatctgaggaaggagcaagctgaaatggagaggacaagcaaggag
agagagaaggagaaaagggcaaggcaacagcagcaagttgtaatgccaggcttgcggcag
ggttcttccacttatctgagacccaaaaaaatgggattatag
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integrated database retrieval system
