Phoenix dactylifera (date palm): 103701784
Help
Entry
103701784 CDS
T03274
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103701784
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103701784
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103701784
Spliceosome [BR:
pda03041
]
Complex C
Other components
Step II factors
103701784
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
RRM_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_22
zf-C3HC4_2
zf-RING_UBOX
IBR_1
AAA_19
zf-C3HC4
HA2_N
ABC_tran
Helicase_RecD
ABC_tran_CTD
AAA_30
Arc_MA
nSTAND3
AAA_29
Motif
Other DBs
NCBI-GeneID:
103701784
NCBI-ProteinID:
XP_008782178
UniProt:
A0A8B7BNK3
LinkDB
All DBs
Position
9:12070054..12082630
Genome browser
AA seq
1736 aa
AA seq
DB search
MRRGAYPHRCLARPAFRPERPLFWQERPPFRPQPLPHPRRWQQPPEPRPCFVVVLLCSPS
TQKGLSSSYIRDLLVSCPSTPENFLYFQGPVVGKLVFRCWADALEAAVYLWGRRLDGAHL
LTAEIESSTGLLPSQRAEEESRLRALFTGHIRGLLECAAVRRCEGKIEQVDNEIKKVSGM
LMKPNRLASFGKMQDTRRSLEAEKEQLESRLVEFRAAMECLIAYLSEQQEVCEEEEGKFE
IFKLQGELDWSRIHHLMERECRRFEDGLPLYACRRKILSHVFSNQVLVLIGETGSGKSTQ
LAQYLADAGLAADGSILCTQPRKIAAISLAQRVGEESYGCYADNFVVSHPTYSSSKEFNS
RLMFMTDNCLLQHCMNDMSLSGISYIIVDEAHERSLNTDLLLALIKKKLLERLDLRLIIM
SATADAGKLAEYFYGCYTLYVMGRNFPVEIKYIPDISVNTICTTTLTHTSGIYASYVCDV
IKMVRIIHKTEGDGSILAFLTSQMEVEWACENFHDPSAVVLPMHGKLSYEEQSRVFQKYS
GKRKVIFSTNVAETSLTIQDVKYVVDSGMVKESRYEPGNGMNVLKVGRISQSSASQRAGR
AGRTAPGKCYRLYSECDFYSMKTHQEPEIRKVHLGIAVLRILALGSKNMQDFEFVDAPSP
QAIDMAMQNLIQLGAVTNNADVFELTDTGRSLVKLGIEPRLGKIILDCFGCGLRKEGLVL
AAVMANASSIFCRVGSDEDKYKADRLKVPFCHRYGDLFTLLSVYKKWEDKHENKSKWCWQ
NSINAKSMRRCQETVVELEKCLQHELNIIIPNYWLWDPDEPTFHDQILKKIILSSLAENV
AMYSGCDRLGYEVALTGQHVQLHPSSSLLMFSQKPNWVVFGEILSISNQYLVCVTAVDSE
SLCVIQPPLFDIQQLESRRMQMNVITGVGSNLLKRFCGKHNQNLQRIISHIQKVCMDDRI
GIDVDFGKSEIQIFASAKDMEKACSIVNDALEYETKWLRDECVEKCLFPGRPGSSPPVAL
FGSGAEIKHLELDKRHLTVEISHPNAHAIDDKEVLLMVDQCVSGIANYHKYAGNGQEGTD
KWGKITFLSPGAAENAVAKLNEVEFHGSLLKAVPVRAVDNKMHPFSAVRARVCWPRRPSK
GVALITCARGEAELIVRDCFALVVGGRYVNCQVSTKYKNCVFVTGLPRDVSKPELYDAFL
TSTKRKILDIHLLRGEAIPNPPGATCAEALVREISAFMPKKNFRDHSFQVEVFNPEPKDY
MMKALITFDGSLHLEAAKALDHIEGKVLPGCLSWQTIQCEHVFHSHLSCPARVYFVIKKQ
LDSLLESFQRQKGVSYSLEKNDNGSCRVKISANATKTIADLRRPLEQLMKGKTVSHPSLT
PTVLQLLLSRDGMALLKAVERKSGTHILYDRQNLNVKVFGPPKEVAAAEQNLVQSLLSLH
EDRQLEIRLRGRNLPPNLMKEVVQRFGPDLQGLKEMVPGAELTLNTRSHIIGVQGHNSLK
QKVEEVISEVALSVDHGWMAEQPLETSCPICLCELWEPYRLEACGHDFCRSCLVDQLEST
IRSRDSFPICCTKEGCNKLILLVDLRSLLPSQRMEELFRASLGAFVASRSGSYRFCPSPD
CPSVYQVATQDARGGHFACGACLVETCTKCHLEYHPFISCGRYKEYKKDPDLSLVEWRKG
KENIKDCPACGYTVEKVDGCDHIECKCGRHICWVCLEFFKSSDECYSHLRSEHQYY
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atgaggagaggcgcctacccccatcgctgcttggcgcggccggccttccggccggagagg
ccgcttttctggcaggaacggccgcccttccgcccccaacccctgccccacccgaggcgg
tggcaacagccgccggagcctcggccctgcttcgtcgtcgtcctcctctgctctccttcc
acccagaaaggcctctcctcgtcgtacatccgcgacctcctcgtctcctgtccttccacg
ccggagaacttcttatacttccagggccccgtcgtcgggaagcttgtctttcggtgctgg
gccgatgccctcgaggccgccgtctacctctggggccgccgcctggacggtgcccacctc
ctgaccgccgaaatcgagtcctccaccggtctcctcccatctcaaagggccgaggaggag
agccgcctcagggccctcttcactggccacatccggggccttctcgagtgcgcggcggtg
cggcggtgcgaggggaaaatcgagcaggtggacaatgagatcaagaaagtatcggggatg
ctcatgaagccgaatcggctggccagctttgggaagatgcaggacactaggaggagtctg
gaggcggagaaggagcagttggagagcaggttggtggagttcagggccgccatggagtgt
cttattgcttacctcagtgagcagcaggaggtctgtgaagaggaggaggggaaatttgag
atttttaagcttcagggtgaattagattggagcaggatccaccatttgatggaaagggaa
tgccggcggtttgaggatgggttgcccctgtatgcttgcagaaggaaaattcttagtcac
gtattctccaatcaggttttggttttgattggggagactggttctggaaagagtacccag
ttggcccaatatcttgccgatgcaggactagctgctgatggatcaattttgtgtactcag
cctcgaaaaattgcagccatatctttggcacaaagggttggggaggaaagctatgggtgc
tatgcagataacttcgtggtttctcatcccacctattcatcctctaaggagttcaattct
cggctaatgtttatgactgacaactgtctcctgcaacattgcatgaatgatatgagtttg
tctggtatatcatatatcattgtagatgaagctcatgaaagaagcttgaacactgatctt
cttttggcattgattaagaagaaactgcttgagaggttagatttacggcttataataatg
tccgcaactgctgatgcaggcaaacttgctgaatatttctatggttgctacaccctgtat
gtcatggggaggaacttccctgtcgaaataaaatatattcctgatatatctgtcaacact
atctgtaccaccactttgacgcacacttctggtatttatgcttcctatgtttgtgatgta
ataaagatggtgcgcataattcacaagacagagggagatggttctatccttgcatttcta
acttctcaaatggaagtggaatgggcttgtgagaattttcatgatccctctgcagtggtg
ctgccaatgcatgggaaactttcttatgaagaacaaagtcgtgttttccaaaaatactca
ggaaagagaaaagttattttttccactaatgtagccgagacttctcttactatccaagat
gttaagtatgtggttgattctgggatggtaaaggagagcaggtacgaacctggcaatggc
atgaacgtgctcaaggttggcaggataagtcaaagttctgctagtcaacgagctggccgt
gcaggacggacagcaccaggcaagtgttacaggctttactcagaatgtgatttctattca
atgaaaacacatcaggaacctgaaattcgcaaggttcaccttggaattgctgttctgaga
attcttgctttgggcagtaagaacatgcaggattttgagtttgttgatgctccaagtccg
caggcaattgacatggctatgcagaatcttatccagttgggtgctgttactaacaatgct
gatgtctttgaacttactgatactggccggtctttagtgaaattgggtattgaaccacgg
ctggggaaaattattcttgattgctttggctgtggtttgagaaaggagggccttgttctt
gctgctgtaatggcaaatgctagcagcatattttgtagagttggcagtgacgaggataaa
tataaagcagaccgtcttaaagttccattctgccaccgttatggagaccttttcacgctg
ctctctgtttacaagaaatgggaagataaacatgaaaataagagtaagtggtgttggcag
aatagcattaatgctaagtcaatgagaaggtgtcaggagactgtagtggaattggaaaag
tgtcttcaacatgaactcaacattatcattccaaattactggttatgggatccagatgag
cccactttccatgatcaaatattgaagaagattatactttcatcccttgcagagaatgta
gctatgtattctggatgtgatcgacttggttatgaggtggctctgacaggtcaacatgtg
caacttcatccatcaagttcattgctaatgtttagccagaaaccaaactgggtagttttt
ggggaaattttatcaatctcaaatcaatatttggtttgtgtaactgcagtggactctgaa
agcttgtgtgtgatccagcctcctttgtttgatattcaacagttggagagccggaggatg
cagatgaatgtgatcactggagttggcagtaatctgcttaaaaggttctgtggcaagcat
aatcaaaacctacagaggattatttcacatattcagaaagtttgcatggatgaccgcatt
ggtattgatgtcgactttggaaaaagtgaaattcaaatatttgcatcagcaaaagatatg
gagaaggcttgtagcattgtcaatgatgccttggagtatgaaacaaaatggttgagggat
gaatgtgtcgagaaatgcttatttcctggcaggcctggtagttctcccccggtggcactg
tttggctcaggtgctgaaattaagcatctagaacttgacaagagacatctaaccgtggaa
atatcccatccaaatgctcatgctatagatgataaggaagttcttttgatggttgaccaa
tgtgtgtctggaatagctaactatcataaatatgccgggaatggacaagagggaacagat
aaatggggcaagataacatttcttagtcctggggctgcagaaaatgctgttgccaagctg
aatgaggtagagtttcatggttccctgttgaaagctgttcctgtaagggcagttgacaat
aagatgcatccattttctgcagttagagccagagtttgttggccacggaggccaagcaaa
ggagttgcacttattacgtgtgctagaggggaggctgaattgattgtcagggactgcttt
gccttggtggttggaggtaggtatgtaaactgtcaggtcagcacaaaatacaaaaattgt
gtatttgtaacaggacttccaagagatgtatcgaaaccagaattatatgatgcttttttg
acttcaacaaagaggaaaatccttgacattcacttgttgagaggagaagcaatacccaac
cccccaggtgctacttgtgcagaagcacttgttagagaaatttctgcttttatgcctaaa
aagaattttcgtgaccatagtttccaggttgaagtgttcaaccctgaaccaaaggattat
atgatgaaagctttaatcacatttgatggcagccttcaccttgaggcagcaaaggctttg
gatcacattgaggggaaagtactgcctggttgtctctcatggcagacaatacagtgcgaa
catgtgtttcacagccatctatcttgtcccgctcgtgtctattttgttattaagaaacaa
ctggattctctacttgaaagcttccagcgacagaagggtgtgtcctatagtttggaaaag
aatgataatggttcttgtcgagtgaagatatctgccaatgccacaaaaactatcgcagat
ttgaggaggcctctggagcagttgatgaaaggcaagaccgtaagccatccaagcctcact
ccaactgtgcttcagctactcttgtcccgggatggcatggccctattgaaagctgtggag
cggaagtctggaactcacattctgtatgacaggcagaacctaaacgtcaaagtgtttgga
cccccaaaggaggttgctgcagctgagcagaatttggtgcaatcgctgctatccctccac
gaggacaggcaactcgaaatccgtcttcgaggtcgcaacctcccccccaacttgatgaaa
gaagtggttcagagatttggaccagatcttcaggggctgaaggaaatggtgcctggggct
gagctgactctcaacacccgaagccacatcatcggtgttcaaggacacaacagtctgaag
caaaaggttgaagaggtgatctctgaggtggcactatctgtcgatcatggttggatggct
gagcagccgttggaaacctcttgccccatttgcctgtgtgagctgtgggagccttacagg
cttgaagcctgtgggcacgatttctgtcggagctgcttggtcgatcaactggagtccacc
atcaggtccagagatagcttccccatctgttgcaccaaggagggttgcaataagctcatc
ctgctcgtggacctgcggtctcttctgccatctcaaagaatggaagagcttttcagggcc
tctttaggggccttcgtggcttccaggagcgggtcctaccggttctgtccctcacccgac
tgcccgtctgtctatcaggttgccactcaggacgcacggggtggacattttgcttgtggg
gcttgcttggtggagacatgcaccaagtgccatcttgagtaccaccctttcatatcttgt
gggagatacaaggagtacaagaaggacccggacctgtcactagtggagtggcgcaagggg
aaggagaacataaaggactgccccgcctgtggttacacagttgagaaggtcgatggctgc
gaccacattgagtgcaagtgtgggagacacatctgttgggtgtgcttggagttcttcaaa
agcagtgatgagtgctatagtcaccttaggtctgagcaccagtactactaa
DBGET
integrated database retrieval system
