KEGG   Phoenix dactylifera (date palm): 103702358
Entry
103702358         CDS       T03274                                 
Name
(RefSeq) THO complex subunit 3 isoform X1
  KO
K12880  THO complex subunit 3
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03013  Nucleocytoplasmic transport
pda03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103702358
  09122 Translation
   03013 Nucleocytoplasmic transport
    103702358
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103702358
   03041 Spliceosome [BR:pda03041]
    103702358
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     103702358
Spliceosome [BR:pda03041]
 Complex C
  Other components
   EJC/TREX
    103702358
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103702358
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40_CDC20-Fz WD40_Prp19 WD40 WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_Gbeta WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_WDR36-Utp21_1st Beta-prop_NOL10_N Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C DSE1_N WD40_MABP1-WDR62_2nd eIF2A Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_DCAF12 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N WD40_RFWD3 WD40_MABP1-WDR62_1st Tricorn_2nd Beta-prop_HPS5 TRM82_WD B-prop_COPA_B_2nd Beta-prop_WDR41 Beta-prop_IFT80_2nd DUF7099 Me-amine-dh_H CNH PROPPIN
Other DBs
NCBI-GeneID: 103702358
NCBI-ProteinID: XP_008782985
UniProt: A0A8B7BPY3
LinkDB
Position
7:3560865..3571249
AA seq 340 aa
MFFWAFSTRQEEREPGSFERATMEEKAPSFKNLSSREYQGHKKKVHSVAWNCLGTKLASG
SVDHTARVWNIDPLGHGKVKDIELKGHTDSVDQLCWDPKHPDLVATAAGDKTVRLWDARS
GKCSQHVELSGENINITYKPDGNHIAVGNKEDELTILDVRKFKPIHRRKFNYEVNEIAWN
TTGELFFLTTGNAGTVEVLAYPSLKVLHTLVAHTAGCYCIAIDPIGRYFAVGSADSLVSL
WDISEMLCVRTFTKLEWPVRTISFNYTGEFIASASEDPFIDISNVQTGRSVHQIPCKAAM
NSVEWNPKYNLLAYAGDDKNKYQADEGVFRIFGFENTQHS
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgtttttttgggctttcagcacgcggcaagaggagagagagccggggagcttcgagagg
gcaaccatggaagagaaggccccgagcttcaagaacctgagctccagagagtaccagggc
cacaagaagaaggttcactcggtagcgtggaattgtttgggcaccaagctcgcatctggc
tctgtagatcacactgctcgcgtctggaacatcgatcccctcggtcatggcaaggtcaaa
gatattgaattaaaagggcatacagacagtgtagatcagctatgctgggacccaaagcat
cctgatttagttgcaactgcagctggggacaagactgtacgtctttgggatgctcgaagc
ggaaaatgctctcaacatgttgaacttagtggggagaatatcaatatcacatacaaacct
gatggaaatcatatagctgttggtaataaggaggatgagcttacaatactggatgttcga
aagtttaaaccgatacataggcgcaaatttaattatgaggtaaatgagattgcatggaat
acaactggagaacttttttttcttaccactgggaatgcaggtactgttgaggtacttgct
tatccatctcttaaggtgcttcacactttggtggctcatacagcaggttgctattgtatt
gcaattgatcccataggaagatactttgctgtcggaagtgccgattcattggtcagtctc
tgggatatttcagagatgttgtgcgtccgaacattcacaaagctcgaatggcctgtcaga
accattagctttaattacactggagaatttattgcttcagccagtgaagatccttttatt
gatatttccaatgttcagactgggagatcagtgcatcagatcccttgtaaggctgcaatg
aacagtgtggaatggaacccgaaatacaacttactggcttatgcaggagatgataagaac
aaataccaagctgatgaaggtgtgttccggatatttggttttgagaacactcagcattca
tag

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