Phoenix dactylifera (date palm): 103702762
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Entry
103702762 CDS
T03274
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pda
Phoenix dactylifera (date palm)
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pda03036
]
103702762
Chromosome and associated proteins [BR:
pda03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103702762
microRNA pathway
RISC loading complex
103702762
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
dsrm
DND1_DSRM
PAZ
Helicase_C
DEAD
ResIII
Dicer_dsRBD
Dicer_PBD
SNF2-rel_dom
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103702762
NCBI-ProteinID:
XP_008783544
UniProt:
A0A8B7BR17
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All DBs
Position
5:7541438..7558386
Genome browser
AA seq
1932 aa
AA seq
DB search
MGGEPTLPGPAGAGNAPANGGGDPASYWFDACEDDSLAGIVFSDFDPSMLPSFDQMGGED
GFLGEIDRILESVNGDPSAPLPAETKAGQKEDSVAAAAPEGGGGLPAPVENGSKSSRSEE
RVGVGEEKKGVDGGAPKRDGGVLNGDWRYGKRARFGDRMMERGRYRDPVCRRRPRDWEDG
DRRRREGDWSRKRERDGSERRDSRDRDWRERDSRGYWERDKSGKVVFRVGPWEAELNREA
KKAKQDGLEEARRSPEKRQEENKEKPAEELARQYQLDVLEQAKXKNTIAFLETGAGKTLI
AVLLIKSVYTEMLKENKRMLAIFLVPKVPLVYQQAEVIRERTGYRVGHYCGEMGQDFWDA
RRWQREFESKQVLVMTAQILLNILRHSIIKMEAIHLLILDECHHAVKKHPYSLVMSEFYH
TTPKGKRPAVFGMTASPVNLKGVSSQEDCAIKIRNLESKLDSIVCTVKDRRELEKHVPMP
LEIVVQYDKAATLWSLHEQIKQMEVAVEEAAHSSSRRSKWQFMGARDAGSKEELRLVYGV
SERTESDGAANLIQKLRAINYALGELGQWCAYKVAYSFLTALQNDERANYQLDIKFQESY
LKKVVALLQCQLNEGAATNSDTKSVDVHNNDAQSIDEIEEGELPNSHAVSGGEHVDVIIG
AAVADGKVTPKVQALIKILLKYQHTEDFRAIIFVERVVAALVLPKVFTELPSLGFIKCAS
LIGHNNNQEMRSCQMQDTIAKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAY
IQSRGRARKPGSDYILMLERGNVSHETFLRNARNSEETLRKEAIERTDLSHLKGTPRLAT
VDTSLGSMYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILRPEFIMERHERPGGSTEY
SCKLQLPCNAPFEKLEGPICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGDEGEK
VEQNDEGDPLPGTARHREFYPEGVSDILRGEWILSGRDGCQNSETFQLYMYAVKCVNVGI
SKDPFLTQVSDFAVLFGNELDAEVLSTTMDLFVARTMITKASLVFQGPIRITETQLVLVK
SFHVRLMSIVLDVDVDPSTTPWDPAKAYLFVPVMAEKFPDPVKEIDWDMVENIVGTDAWK
NPLQRARPDVYLGTNERTLGGDRREYGFGKLRHGMAYGQKAHPTYGIRGAVAQFDVVKAS
GLVPHRDTMVCMEDVYWSQGKLVMADSCIDIKDLVGKIVTAAHSGKRFYVDSVQDDMNAE
NSFPRKEGYLGPLEYSSYADYYRQKYGVELIHKKQPLIRGRGVSYCKNLLSPRFEHSEAR
EGESEENLDKTYYVFLPPELCLLHPLPGTLVRGAQRLPSIMRRVESMLLAVQLKDVINYP
VPAARILEALTAASCQETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV
SNMVLYQYALNKRLQFYIQADRFAPSRWAAPGVLPVFDEDIKESESSIFGEECPAAETEP
QKDFYDDDYEENIREDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMRW
IGIQVEFDPQELPCPKPHNIPESIMRSVDFDALEAALIIKFKDRGLLVEAITHASRPSSG
VSCYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVH
LRHGSSALEAQIRDFVKDVQDELSKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDNGLD
TSIVWRVFQPLLHPMVTPETLPMHPVRELQERCQQQAEGLEYKATRTGNVATVEVFIDGV
QMGVAQNPQKKMAQKLAARNALVILKEKEKENASKKDTEKSGEKKNGVQIFTRQTLNDIC
LRRQWPMPQYRCVYEGGPAHAKRFVYAVRVNTSDRGWTDECIGEPMPNVKKAKDSAAVLL
LELLNRCYPDSK
NT seq
5799 nt
NT seq
+upstream
nt +downstream
nt
atggggggcgagcccacattgcccgggccggcgggcgctgggaacgccccggccaacggc
ggcggcgatccggcatcctactggttcgatgcctgcgaggacgacagcctcgccggcatc
gtcttctccgacttcgacccttcgatgctgccatccttcgatcagatggggggcgaggat
ggtttccttggagagatagatcggattctcgagagcgttaatggcgatccgagtgctccg
ttgcctgccgagacgaaagcgggccagaaggaggactcagttgccgccgccgcccccgaa
ggcggcgggggactgccggcgccggtggagaacgggtccaagagcagtaggagtgaggag
cgagtcggagtgggggaggagaagaagggtgtggatggcggggcgccgaagagagatggt
ggtgtgctgaatggcgattggaggtacggcaagagagcccgtttcggcgatcggatgatg
gagaggggacggtacagggatcccgtgtgtcggcggcggcctcgtgattgggaggatggt
gatcggaggaggagagagggggactggagtaggaagagggagcgggacggctcggaaagg
agggatagcagagatagggattggagggagagggacagcagagggtattgggagagggat
aaatcggggaaggtggtgttccgggtggggccatgggaggcggagctgaaccgagaggcg
aagaaggccaagcaggatggattggaggaggcgaggcggagccctgagaagagacaggaa
gagaacaaggagaagcccgcggaggagctggcaaggcagtaccagcttgatgtcctggag
caagccaaanagaagaacacgatagcttttttggaaaccggggctgggaagacactgatc
gcagtactcctcatcaagagcgtctacaccgaaatgctcaaagagaacaaaagaatgctg
gcaattttcttggtgccaaaggttccccttgtttaccagcaagcagaagttattcgagag
aggaccgggtatagagttgggcattattgtggtgagatgggccaagatttctgggatgcc
cggaggtggcagcgtgaatttgaatccaaacaggtgctggttatgacagctcaaattttg
ttgaacattctcaggcacagcataattaagatggaagctattcatcttctaattttggat
gagtgccatcatgctgtaaagaaacacccatattctttagtcatgtcagaattttatcat
actactccgaagggtaaaaggccggctgtctttggtatgacagcttctcctgtcaactta
aagggtgtttctagtcaggaggactgtgctatcaagattcggaatcttgaaagcaaatta
gattccatcgtctgtacggtaaaagatcgaagggagctggagaagcatgtcccaatgccc
ttggaaatagttgtgcagtatgataaagcagctaccttgtggtcccttcatgagcaaata
aaacaaatggaagtagcagttgaagaagctgcacattccagttctcggagaagcaagtgg
caatttatgggagccagagatgctggatcaaaagaagaattgcgcctggtttatggtgtt
tcggaaagaacagagagtgatggtgctgccaatttaattcagaagttgagggctataaat
tatgctttaggtgaactgggacaatggtgcgcatataaggttgcatattcctttttgaca
gccttgcagaatgatgaaagggcgaactaccagcttgatatcaagtttcaagaatcatat
cttaagaaggttgttgctttattgcaatgccagttaaatgagggagctgccaccaacagc
gatacaaaaagtgtagatgtacataataatgatgctcaaagcatagatgagattgaggag
ggagagttgccaaacagtcatgctgtctctggtggtgagcatgtagatgttataatagga
gctgctgtcgcagatgggaaagttactcctaaagtgcaggcattgattaaaatacttctg
aagtaccaacacacagaggatttccgtgcaatcatttttgtggagcgagttgttgctgca
ttggttcttcccaaggtcttcacggagcttccatctctcggttttatcaagtgtgcgagc
ttgattggacacaacaataaccaggaaatgcgttcatgccaaatgcaggacacaattgca
aaatttcgtgatggccgagtcactttattagtagctacaagtgttgctgaggaaggactt
gatattcgacagtgcaatgttgtcattcgctttgaccttgcaaaaactgttttagcctat
atccagtctagaggtcgtgcaaggaagcctggatctgactacatattgatgcttgagagg
gggaatgtgtcacatgaaacatttttgaggaatgctcgcaatagtgaagaaacgttgaga
aaagaagctatagaacgaactgatcttagtcatcttaagggtactccaaggctagctaca
gtcgatacatcactgggttccatgtaccaggtggaatcaactggtgctgttgtcagctta
aattctgctgttggactcatccatttttactgttcccaactaccaagcgacagatattca
atacttcgtccggagtttatcatggaacgacatgagaggccaggtggctcgactgagtat
tcctgcaagcttcagcttccttgcaatgctccatttgaaaagcttgaaggtcccatatgc
agttcaatgcgccttgcacaacaggctgtttgtttggctgcgtgtaagaaattacatgag
atgggggccttcactgacatgcttttgccagacaagggaagcggggatgaaggtgaaaaa
gttgaacagaatgacgagggagatcctcttcctggaacagcacgacatagagagttctat
cctgaaggtgtatcagacattctcaggggggaatggattttgtctgggagagatggttgc
cagaactccgaaacgtttcagttgtatatgtatgctgttaaatgtgttaatgttgggatt
tccaaggacccattcctaacacaagtttcagactttgcagtactttttggcaatgagctg
gatgcagaggttttatcgacgacgatggatctctttgttgctagaacaatgataacaaag
gcatctctcgttttccagggacccataaggattacagaaactcagctggttttagtgaag
agctttcatgtcagacttatgagtattgtgcttgatgttgatgttgatccctcaactact
ccatgggatcctgcaaaagcatatctctttgtccctgtgatggctgagaagtttcctgat
cctgtcaaagagattgactgggatatggttgagaacatagtaggtactgatgcgtggaaa
aatcctcttcagagggcaaggccagacgtatatcttggtactaatgagcgaacactcggc
ggggaccgaagggagtatggatttggaaaattacgtcatggcatggcttatggtcagaaa
gcccaccctacatatggaatcagaggggctgtggcgcaatttgatgttgtgaaagcctct
ggattggttcctcatcgagatactatggtgtgcatggaggatgtttattggagccaaggg
aaattggttatggcagattcttgtattgacattaaggatcttgttgggaagatcgtaact
gctgcacactcaggaaaaaggttctatgtggattctgtgcaggatgatatgaatgcagag
aattcattcccaaggaaggagggctatctaggacctttagagtacagctcatatgctgat
tactacaggcaaaagtatggagttgagttgattcataagaaacaacctcttatacgtgga
cgtggtgtttcatattgcaagaatctcctttcccctagatttgaacattctgaagcacgg
gaaggtgaatctgaagagaatctagacaaaacatactatgtatttttgcctcctgaactc
tgcctccttcatccacttcctggaaccctcgttcgtggtgctcagaggttgccttcaata
atgagaagggtggagagcatgctgcttgctgttcagctcaaggatgtgatcaattatcct
gttcctgctgccaggattttggaagccttgactgctgcttcatgtcaggagaccttctgc
tatgaaagagcggagctgttgggtgatgcatacctgaaatgggttgttagtagatttctt
ttccttaaatatcctcaaaagcatgagggtcagcttaccaggatgaggcaacagatggtg
agtaacatggtgctataccaatatgcactaaataaacgacttcagttctatatccaagcc
gatcgctttgctccgtccagatgggctgctcctggagttcttcctgtctttgatgaagat
ataaaggaatcagaatcctccatatttggtgaggaatgtcctgctgcagagactgagccg
caaaaggatttctatgatgatgattatgaagagaacatacgggaagatggtgagattgag
ggtgattccagctgctatagggttctctctagcaaaaccctagcagatgttgttgaagcg
ctgattggggtgtattatgttgaaggtgggaagaatgctgcaaaccacctaatgagatgg
attgggattcaggtggagttcgaccctcaagagcttccatgtccaaagccgcacaacata
ccagaaagcataatgaggagtgttgactttgatgcattagaagctgcactaattatcaag
tttaaagatagaggcctgttggtggaagccattacacatgcttcgaggccttcatctggt
gtttcttgttatcagcgacttgaatttgttggagatgctgtattggatcatctgatcaca
aggcacctgttcttcacatacaccgacttgcctcctggacgcctgaccgacttgcgagct
gctgctgtgaataatgagaactttgctcgtgttgcagtcaagcacaagttgcatgtgcac
cttcgtcatggatcaagtgccctagaggcacagatacgggactttgtgaaggatgttcaa
gatgaactgtcaaaaccaggcttcaactcatttggccttggagactgcaaggctcccaaa
gttcttggagacattgttgaatccattgcaggtgctatttttcttgacaacggactagac
acttcaatagtctggagggtcttccaaccactgctacatccaatggtcaccccggaaact
ctaccaatgcatccagtgagggaactccaagagcgttgtcagcaacaggcagagggctta
gaatacaaagcaacacgtacaggcaatgtagctacagtcgaagtcttcatcgatggggtt
cagatgggagtagctcagaacccacaaaagaagatggcacaaaaattggctgcaagaaat
gcacttgtgatcttgaaggaaaaggaaaaggagaatgcatcaaagaaggatacagagaaa
agtggagaaaagaagaatggtgttcagatcttcacaaggcaaacacttaatgacatctgc
ttaagaaggcagtggccaatgccccaatatcgatgtgtttatgaaggtggccctgcccat
gctaaaaggtttgtctatgcagtccgtgtaaatacatccgatcgtggctggactgatgag
tgcattggggagcctatgccaaatgtgaagaaggcaaaggactctgctgctgttctcctc
cttgagcttctcaaccgatgttatcctgatagtaaataa
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