Phoenix dactylifera (date palm): 103702851
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Entry
103702851 CDS
T03274
Name
(RefSeq) uncharacterized protein LOC103702851 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103702851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pda03000
]
103702851
03019 Messenger RNA biogenesis [BR:
pda03019
]
103702851
04121 Ubiquitin system [BR:
pda04121
]
103702851
Enzymes [BR:
pda01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103702851
Transcription factors [BR:
pda03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
103702851
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103702851
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
103702851
Ubiquitin system [BR:
pda04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103702851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
PcfJ
Rtf2
Nup35_RRM_2
zf-UDP
Cadherin_4
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
103702851
NCBI-ProteinID:
XP_008783662
UniProt:
A0A8B7BR54
LinkDB
All DBs
Position
3:complement(21612673..21627731)
Genome browser
AA seq
1067 aa
AA seq
DB search
MTTMSDDGERMCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKEETEGRCPACR
TPYDKERIVGMAANCERVVAEINAEKKQKSQKAKPKASGEARKHLSSVRVIQRNLVYIIG
LPSNLCDESILERREYFGQYGKILKVSISRLTGAAAQQASNNNTFSVYITYAREEEAIRC
IQAVHNFVLEGKSLRACFGTTKYCHAWLRNMACNNSDCLYLHDIGSQEDSFTKDEIISAY
TRSRVPQIASNNSQRRLGNVLPPPVDDFSSSGTVTGKQAIKSVSNNAPSHAKGSPPNSSA
GKPTILPAAASWGLRSSYCRSPAVSTACSQTPVKQKVEMLNSTSLLSSSTASTKESSAWH
DDVVTTVKIPERRHVMPMNGISRSSEPSKSGSVKECRTVMSSEGLTDADCASVPSAWNDD
MIVTSKKSEPFKSVNVEEFRTSGSDLSPDDVLDAPRTSQKYGSCLSRLLAPAAEDKGRGT
TLAGSYTESMNDPIPKGTDGRSSSADKTAKGSITVNGNIESLCLGLSSVNIDNHLEHGRS
NMDKHQTSKSDLSSSPQQCQPKHEVEHLSSEPPSRASVLPDACIANELSDWDLDPQKQGL
TSPGIEKEDDDNNQPSCSPYLHHSHSSANQCSYSSQNNGVAIKHSTYIGDSKTMVTKADM
ASFTSRENKSALYNGHKEDELSCFSNSGKVFESPEMNCSEERIKCLGKNDDAATSDKTAS
VDMGESSIISDILSLDFDPWDDSSSANNFSKLLAETEKQDRSLKLSSSWRSLNSNQSRFS
FARQESQAGGLEASLRDSGNAQKLCSSLQDSFGDGSQHGFQFNNFEGPNAVFNSNLAISS
DRFGVSRAKIAAPPGFSAPSRAPPPGFSSQDRFNQAYDSTYSDNHLLGSPSLGNQYQAHL
TGNPDDVEFIDPAILAVGKGRMPLGLNSSGFSSKSDFPSQFSPSDGDPRLQLLMQQPISS
HQNLRIPDHIGDRFLPLNDAYITSRLLAQNHGNLSPFAQMSLQRPRSAHISNGQWGGWND
VRNGSEMGMPEFLSNERFGLNNYYSGNGEHKFHMPSSGDLYNRAFGL
NT seq
3204 nt
NT seq
+upstream
nt +downstream
nt
atgacgaccatgagtgacgatggagagaggatgtgccctttgtgcgctgaggagatggac
ctgactgaccaacagttgaaaccatgcaaatgtggttacgagatttgtgtttggtgttgg
catcatataatggatatggctgagaaggaagaaacagaagggcgatgcccagcatgccga
acaccatatgacaaagaaagaattgttggaatggctgccaattgtgaaagggtggtggct
gagattaatgctgagaagaaacaaaagtctcaaaaggcaaagcctaaagcatcaggagaa
gctaggaagcatcttagcagtgttagagtgatacaacggaaccttgtgtacataattggg
ctaccttctaatttatgtgatgaaagtatacttgagcgcagggaatactttggtcagtat
gggaaaattttaaaagtatcaatttctcgcctaactggtgctgcagcccagcaagcatca
aataacaacacatttagtgtgtacataacatatgctagagaggaggaagccattcggtgt
attcaagctgtgcacaattttgttttggaaggtaaatctttgagagcttgctttggtact
acgaagtattgccatgcttggttgagaaatatggcttgcaacaattcagattgtctatat
ttgcatgacattggtagccaagaggatagcttcactaaggatgagataatttcagcttat
acaaggagtagggtcccgcaaattgcttcaaataattcacaacgacgcttggggaatgtg
ttgccgcctccagtagatgatttctctagcagtgggacagttacaggcaaacaagcaatc
aagagtgtctcaaataatgctccaagccatgccaaaggttctcctcctaacagtagtgct
ggaaagcctactattttacctgctgctgcttcatggggacttcgcagttcatattgccgg
tctccagctgtaagtacagcatgctcacaaacacctgttaaacagaaagtagaaatgtta
aacagtacatccttgctttcatcatcgactgcaagcacaaaagagtcttctgcgtggcat
gatgatgtagttacaacagtgaagattccagaaagaaggcatgtaatgcctatgaatggc
atatctagatcctcggaaccatcaaaatctggttctgtgaaggagtgccgaacagtgatg
tcatcagaaggtcttacagatgcagattgtgcttctgtaccttctgcatggaatgatgat
atgattgtaacgtctaagaaatcggagcctttcaaatctgttaatgtggaggagttccgg
acatctgggtcagatttgtcgcctgatgatgtactggatgcacctcgtacttctcaaaaa
tatggtagctgcttatctagacttctggcaccggcagctgaagacaagggaagaggcacc
actcttgctgggagctacacagagtcaatgaacgaccctattcctaaaggtactgatggg
cgatcttctagtgctgataaaactgctaaaggtagcataactgtgaatggtaacatagag
agtttatgtttgggcttgtcttctgttaatattgataaccatcttgagcatggtcggtca
aacatggacaagcatcagacttcaaagtctgatctatcttcaagccctcaacaatgtcaa
cctaaacatgaggttgaacatttatcttcagagccaccgagcagagcctcggtcctgcct
gatgcatgtattgcaaatgaattatctgattgggatctggatccgcaaaagcaaggtttg
acatctccaggaatcgagaaggaagatgatgataataatcagccatcatgttcaccttat
ctacatcattctcacagtagtgcaaatcaatgtagttatagttctcagaataatggcgtt
gcaatcaagcactcgacatatattggtgatagtaaaactatggtgacaaaggcagacatg
gcctcatttacatcaagagaaaataaatctgcactatacaatggacacaaagaggatgag
ctaagctgtttctctaatagtggtaaggtttttgaaagtcccgagatgaactgctctgaa
gaaaggataaaatgtttaggaaaaaatgatgatgcagctacttctgacaaaacagcaagt
gtagatatgggagagagcagcatcatttcggatatattgtcactagattttgatccatgg
gatgactcatcctcagcaaataatttttctaagctgctagctgaaactgaaaagcaggac
aggtcattgaaattatcgagttcatggagatctcttaatagcaatcaatccagattttca
tttgcaaggcaagaaagtcaagcaggtggtctagaggcttctcttagagacagtggtaat
gcacagaaattatgctcatctttgcaggattcttttggagatggttcccaacatgggttt
caattcaataattttgagggtcccaatgctgtcttcaacagcaatctagctatttcctct
gatagatttggagtttcgagggctaaaatagcagcaccacctggattttcggcaccaagt
agagctccccctccaggcttttcatcacaagatagattcaaccaagcttatgattcaaca
tactctgataaccatctgctgggtagtccttcacttggaaatcagtatcaagcgcattta
actggaaatccagatgacgtggaattcattgatccagcaatacttgctgtgggcaaaggg
cgaatgccgcttggactgaatagttcagggtttagttcaaaatctgatttcccttcacag
tttagcccttctgatggtgatccaaggcttcagctattgatgcagcaacccatctcttct
catcaaaatctaagaataccagatcatattggggatagattcttacctttaaatgatgct
tatattacatctcgtcttttagcccaaaaccatggaaatctgtctccgtttgcacagatg
tcactccaacgacccagaagcgcacacatttcaaatggccaatggggtggttggaatgat
gtaagaaatggcagtgaaatgggcatgcctgagttcttgagtaacgagaggtttgggcta
aataactactattctggcaatggggaacataagtttcacatgccaagctcaggtgatctg
tataacagagcatttggattgtaa
DBGET
integrated database retrieval system
