Phoenix dactylifera (date palm): 103703018
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Entry
103703018 CDS
T03274
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X2
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pda03041
]
103703018
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103703018
Spliceosome [BR:
pda03041
]
Complex C
Other components
Complex C specific factors
103703018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
HA2_N
AAA_30
AAA_19
AAA_7
ResIII
nSTAND3
Helicase_RecD
AAA_11
AAA_23
AAA_29
T2SSE
RVP_2
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
103703018
NCBI-ProteinID:
XP_008783931
UniProt:
A0A8B7BRM8
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All DBs
Position
8:complement(19435365..19472723)
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AA seq
692 aa
AA seq
DB search
MSKYWKPGSERPRTVLVDDEEGGVLFLSSPPSSSGFGHSSLERQRQRLPVYKYRTAILYL
VENHATTIIVGETGSGKTTQIPQYLKEAGWAEGGRVIACTQPRRLAVQSVASRVAEEMGV
KLGEEVGYTIRFEDQTKPNVTKIKFLTDGVLLREMMDDPLLIKYSVIMVDEAHERSLSTD
MLLGLLKKVQRRRPQLRIIISSATIDAKSMSTFFHIRRRNIGQAAEDPTPSELPAILSVE
GKGYNVEIHYVEEPVSDYLQAAVNTVLSIHDKEPPGDILVFLTGQDDINAAVQLLTEDAQ
NNGLLVLPLFSGLSRADQDLIFSPTPKGKRKVVISTNIAETSLTLEGIVYVVDSGFSKQR
FYNPIPDIENLVVAPISKASARQRAGRAGRVQPGKCFRLYTEEYFVKEMPAEGIPEMQRS
SLVSCVIQLKALGIDNILGFDWLASPSPEAMIRALEVLYSLGILDEDAKLTSPTGFQVAE
IPLDPMISKMILSADTYGCSEDIITIAAVLSVQSIWISVRGAQKEFDEVKLRFAAAEGDH
VTYLNVYKGFIHSGKSSQWCYKNYINYHAMKKVIDIREQLSRLLRRLGIVLKSCERDTQV
LRKAIIAGFFAHACCLEEFSPNGMYKTIKSSQEVYIHPSSVLFRVNPKWVVYHSLVSTDK
HYMRNVIAIDPSWLIEAAPHFYQVRKPNPAPY
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagtactggaagccaggctccgagaggcctcggacggttctcgtcgacgatgaa
gaaggcggagtgctcttcctttcctctcctccctcctcctctgggttcgggcattcaagt
ctggagaggcagcggcagaggcttccggtgtataaatatcggaccgcaattctttatttg
gtagagaatcacgccacaaccataatcgttggagagacgggaagcggaaagaccacccag
ataccacaatatcttaaagaggcaggttgggctgaaggtggtcgagttatagcttgtacc
cagccaagacgattggctgttcagtccgttgcctcacgggtagctgaagagatgggtgtc
aaacttggagaagaggttgggtatactattcgttttgaggatcaaacaaaaccgaatgta
accaagatcaaatttctaactgatggggtcttgcttagagaaatgatggatgatcctctg
ctgatcaagtacagtgtcataatggtagacgaggctcatgagagatccctttcaacagac
atgttactaggcctcttgaaaaaggtccaacgccgtagacctcagttgcgtataatcatt
tcatctgcaacaattgatgcaaaatccatgtcaacctttttccatattaggaggaggaat
ataggacaggctgcagaagatcccacacctagtgagctgcctgccatactttctgttgaa
ggaaaaggatacaatgtggaaattcattatgttgaggagcctgtctctgattatttacaa
gctgctgttaataccgtgctatcaattcatgataaggaaccacctggtgacattctggtc
ttccttacaggtcaagatgatattaatgctgctgtacagttacttacagaagatgctcaa
aacaatgggttgttagttttgccactattctcggggctttcacgtgcagatcaggacctc
attttttctcccactcccaagggaaaaaggaaagttgtcatatcaactaatattgctgag
acatcattgactttggagggaatagtgtatgtcgtggatagtgggttctcaaagcagcgc
ttttataatccaattcctgatattgagaacttggtggtggcaccaatatccaaggcttct
gcaagacaaagggcaggcagggctggaagggtacagccagggaagtgttttagactttat
actgaagaatattttgtcaaggaaatgcctgcagaaggaattccagaaatgcaaaggtca
agccttgtttcctgtgtgatacaattgaaagccttgggcatagataatatattgggcttt
gattggctagcttctccatcgccagaggcaatgatccgagcacttgaggttctctactcc
ctcggaattcttgatgaagatgccaaacttacatcacctactggttttcaagttgctgag
attccattagaccctatgatctccaaaatgatcttatcagcagatacatatgggtgttcg
gaggatataataactatagcagcagttctttctgttcagtctatctggatttctgttaga
ggagcacagaaggaatttgatgaagtgaagctgcggtttgccgctgctgagggagatcat
gtaacatacctgaatgtctacaagggatttattcactctggcaaatcttctcagtggtgt
tacaaaaactatataaattaccatgctatgaagaaggttattgacatcagggaacaactc
agcaggttattgaggcggcttggcatagttctgaaatcttgtgaaagagacacccaggtg
ctaagaaaggcaatcattgcgggtttttttgcccatgcatgctgcttggaggagttcagt
ccaaacggtatgtacaagacaattaagagttcccaagaagtatacatccatccatcttcc
gtacttttcagagtcaatccaaagtgggtggtctaccattctcttgtttccaccgacaag
cattatatgcgcaatgtaattgctattgatccatcctggcttattgaagctgcaccacat
ttctatcaagtccggaagcccaaccctgccccctactga
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