Phoenix dactylifera (date palm): 103703477
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Entry
103703477 CDS
T03274
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103703477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pda03021
]
103703477
03019 Messenger RNA biogenesis [BR:
pda03019
]
103703477
Transcription machinery [BR:
pda03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103703477
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
103703477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
Motif
Other DBs
NCBI-GeneID:
103703477
NCBI-ProteinID:
XP_026658914
UniProt:
A0A8B8J1Z0
LinkDB
All DBs
Position
12:1188902..1203741
Genome browser
AA seq
1118 aa
AA seq
DB search
MGHAPVSPTPSALAFSLPLPQSPWPLSIQTLALAPEVPIKGGKKAERAGRIRASMEDEGL
SSSRGNPRFPQGDRPPRTAPAAEPQPATGRLLQPILDRFRAMLREREEELREATGEDTPP
PPTAGEIVRLYEELLSELTFNSKPIITELTIIAGQHLQFAEGIADAICVRVLEVPLDQKL
PSLYLLDSIVKNIGREYMRYFAARLPKVFCEAYNQVHPNQYPAMRHLFGTWFQVFPLSVL
RKIEDELQFSPSKSNQSSGITSMRRSESPSPRPSHGIHVNPKYLEARHLFKHSTAVRAVE
SHDKVHMTDFNGEQMEENASEGLKGWSGASPKFHDIEHARGVSSSLQVYGRKSSMQCNKY
DIDNPEVRPSRRGILRAGSPHTAATQASSMVEVEGPTHHSKSKFSRFSPPPIIGPRKSIL
PLTDRFSRNTSPRRVLERASPSHSGAGRGTNQNSWFERIWPFDDVTQQVKSSMAFNLNNG
YAEKHSRELIDAYGNCSGTSTSLEKLPKVQRLDVNGLASEAANIKWKNSEEEEYVWEDMS
PTLSDRSRRNSQPPLGRSTGSLSIRGGLTRPDASLLEHDFGRHSWPGQAQAVDDPAYTVE
DRIPLFGSAHGSRNRKNLDSIVNQNKLLPHSQGSHHTREPRKLPYVFPQSSQQSLSPQAR
GRAPQMPVAASGITPPIGNKLPNLYENTPDMEVAFQELSSSHSNPFNVDTSTLEIYLPQI
PHSPPPAPIIWPPVHKSEALPLLPILPNQKQFKSPFDFLEASKPLLNQGLESSFYFSQHQ
DDTADTKNSNSNKLLQVPYQQPGLAHENRQSQERGTNMQIQSQEAHRGFIPSAPAQLSFQ
PLNHAQPSGQGVAMGSVLPNPLSRLPSSAAVNSMPDTSLHVHASILPPLPPGPPPASSHM
GPVSQNMGSVVSCSPASAFSGLISSLMAQGLISLTSPAQSQDSVGVEFNAELLKVRRELA
INALYTDLPRQCTTCGLRFKCQQEHGSHMDWHVTKNRISKYRKQKPSRKWFVSAKEWLSG
AEALGNDVVPGFLPTEDVTEKKEDKELAVPADENQTVCALCGEPFEDFYSDDAEEWMYKG
AVYLNAPEGYSEGLDRLQLGPIVHAKCRSESTEGSGQT
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgggacatgcgcccgtttcccccacaccgagcgcgctcgcgttttcccttccccttcct
cagtccccatggcccctctcgatccaaaccctagccctagcccctgaagtcccaattaaa
gggggcaagaaagccgagagagcgggaaggattcgggcttcgatggaggatgaggggctc
tcctcctcacgggggaaccctagattcccgcagggggaccgccccccgcggacggcgccg
gcggcggagccgcagcccgcgacggggcgcctactccagccgatcctagaccggttccgc
gccatgctccgggagagggaggaggagctgcgggaggcgactggcgaggacacacccccg
cccccgaccgccggagaaatcgtccggctctatgaggagctcctctcggagctcaccttc
aactcgaagcccatcatcaccgagctcaccatcatcgccggtcagcacctccagtttgcg
gaggggatcgctgacgccatctgtgttcgggttctcgaggttcctctggatcaaaaacta
ccctccttatatcttctggatagtattgtgaagaacataggtcgtgaatatatgaggtat
tttgcagctcgtctccccaaggtgttttgtgaggcatacaatcaagtccatccgaaccag
tatcctgccatgcgccacctttttgggacttggttccaagtcttccctttatcagtactt
cgcaagattgaggatgaactccaattttctccttctaagagcaaccagtcatcaggaatt
acaagtatgaggcgctctgaatctccatctcctcgtccatctcatggcattcatgtaaat
cctaaatacctagaagcacgacatctcttcaaacattcaacagcggtgcgtgcagtagaa
agtcatgataaggtgcatatgactgattttaatggggagcaaatggaggaaaatgcatca
gagggccttaaaggatggtctggagcttctccaaaatttcatgacattgaacatgccaga
ggagtttcttccagtttacaagtttatgggcggaaatcttccatgcaatgtaacaagtac
gatattgataatcctgaggtgcgtccttcacgaagagggatattaagagcaggttcacca
cacactgcagccacacaagcatcctctatggttgaagtggaaggtccaacccatcattca
aagagcaagttttcaaggttttcacctcctccaataattggaccacgaaagtctatatta
cctctcactgacagattctcaagaaatacttcccccaggagggtgcttgaaagggcttct
ccatctcattcaggagctggcagagggactaatcagaacagttggtttgagaggatctgg
ccttttgacgatgttacccagcaagtaaaatcttccatggcattcaaccttaataacgga
tatgccgagaagcactcgagagaactaattgatgcatatggaaattgtagtgggacaagc
acttctcttgaaaagcttccaaaggttcaacgacttgatgtaaatggcttagccagtgag
gcagccaatataaaatggaagaattctgaggaagaagagtatgtttgggaggatatgagc
ccgactttatctgaccgaagcagaagaaacagccagccacccttagggcgcagtactgga
agcttaagcataaggggtggtttaactagaccagatgcttcactgctggaacatgatttt
ggaaggcacagttggcctggccaagctcaggcagttgatgatcctgcttatactgttgaa
gataggatacctttgtttggttctgctcatggatcaaggaataggaagaatctggatagc
atagtaaatcagaacaagttgttgccgcacagtcagggttctcaccacactcgtgaacct
cggaagttgccttacgtgttcccacaatcttcacaacagagccttagtccacaggcgcga
ggaagggctcctcagatgcctgttgcagcaagtggaataacacctccaattggtaataaa
ttgcccaatctatatgaaaatacaccagatatggaagtggcatttcaggaattgtcaagc
tctcattctaaccctttcaatgtggacacatccacattagagatatatttgccacaaata
ccacattcaccccctcctgctccaattatatggcctcccgttcataaatctgaggcgctg
cctttactacctattcttccaaatcaaaagcagtttaaaagtccttttgattttctagaa
gctagcaagcctttactgaaccaaggcttagaatcatctttctatttttctcagcatcag
gatgacactgctgatacaaaaaactcgaactcaaataagttgcttcaagtaccatatcaa
cagcctggcttagctcatgaaaatcgtcagagtcaggaacgaggcactaacatgcaaatt
cagtctcaggaggctcacagaggctttattccatctgcaccagctcagctttcatttcaa
cccttaaatcatgcacaaccatcaggacagggtgtcgccatgggttcggttttgcctaat
ccattatctcggttaccttcttctgcagcggtgaacagtatgcctgatacctctttgcat
gtgcatgccagcattttacctcctttgcctccaggaccacctcctgcctcatcacatatg
ggacctgtttctcaaaatatgggctctgtggtatcttgctcacctgccagtgcattttct
ggcctgatcagtagtcttatggcacagggtttgatatcattgacatcaccagcccaatca
caggattctgtgggggttgaatttaatgctgaacttcttaaggtgcgacgtgagttggca
attaatgctttgtatactgatcttcctaggcaatgcacaacatgtggcttacgtttcaag
tgccaacaagaacacggcagtcacatggattggcatgtgactaaaaacagaatatctaag
tatcgcaagcaaaagccatctcgcaaatggtttgtgagtgcaaaggaatggcttagtggg
gcagaagcacttggaaatgatgttgttcctggctttttgccaacagaggatgttacagag
aagaaggaagataaagaactggcagtccctgcggatgaaaatcagacagtgtgtgcatta
tgtggggaaccttttgaggatttttatagtgatgatgccgaggagtggatgtacaaaggg
gcagtatatttgaatgctccagagggatatagtgaaggtttagacaggttacagttgggc
cccattgtccatgccaagtgcaggtctgagtcgacggaaggatctggacaaacttaa
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