Phoenix dactylifera (date palm): 103703577
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Entry
103703577 CDS
T03274
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103703577
03015 mRNA surveillance pathway
103703577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103703577
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103703577
5.6.2.5 RNA 5'-3' helicase
103703577
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103703577
mRNA cycle factors
Common to processing body (P body) and stress granule
103703577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
UvrD-helicase
NAT10_TcmA_helicase
nSTAND3
ATPase
PhoH
SRP54
AAA_22
AAA_16
AAA_32
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
103703577
NCBI-ProteinID:
XP_008784706
UniProt:
A0A8B7BT20
LinkDB
All DBs
Position
2:7152129..7178352
Genome browser
AA seq
1262 aa
AA seq
DB search
MAADSVVNNLYETASQPDTGGDAYTFLEFNTQGDEYDYPEFRELSQPTRSPAWPHPPAPD
AVPDSPSADRLAPEAGAGSSASASSSKGRGGTGNQAAADALAAGMSGLSFEETVEDENYE
YGKADFSEHACRYCGVQNPACVVRCNIPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCL
HKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWC
PLIDDRCFLPWLVKVPSEQEQLRARHISAQQINKVEELWKTNPDAALEDLEKPGVDDEPQ
PVALKYEDAYQYQNVFAPLIKLEADYDKTMKESQSKDNVTVRWDIGLNKKRVAYFVFPKE
DNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRANQGVPVDVNHGFSV
DFVWKSTSFDRMQGAMKTFAVDETSASGYIYHHLLGHEVELQIVRNTLPRRFGAPGLPEL
NASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLA
EKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRHLDTSEKSELHKLQLLKDEQGELSS
SDEKKFKALKRATEREILQNADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIP
LVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPFRLQVQYRMHPSLS
EFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTE
AANVEKIVTTFLRSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSF
QGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLL
THYKEHECLVEGPLNNLKQSMIQFQKPKKIYSDRRLFLGGGPGIMHSDNFGSISSSGPNA
DRRGGRGKGHSYMPFGPQNGTHKPGVHPAGYPLSRIPVPPFPGGPHSQPYAIPTRGAIHG
PIGAVSQVPQPGNRGFGTGRGHAGGPIGGHLAHQQTSQQALGGIGSAFNFPALDNPNSQP
SAGGPLSQTGLMTQVPVQGLSQTFREGFSMGGMSQDFLADDFKSQGSHVAYNVTDFSTQA
SQSGYGVDYVAQGQAGFPGSYLNQNSQPGYSHLGTGNDFISQDYMPHGSQGLLTQAGIND
PSQDESSQSHFSMTGPGPLQSQGLMNPLYSQPFAHYNTQPQNLQPPHPQSQSSPNQKLHY
NG
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgattcggtcgtcaacaacctctacgagacggcgtcgcagcccgacacgggc
ggcgacgcctacaccttcctcgagttcaacacccagggggacgagtacgactaccccgag
ttccgagagctctcacagcccacccgatccccagcctggccccatccgccggcgccggat
gccgtgccggactccccctccgccgatcggctggctcccgaggccggcgcggggtcgtcg
gcttccgcctcgtcgtccaagggcaggggcgggaccggcaatcaggcggcggccgatgcc
ctcgcggcggggatgagcgggcttagcttcgaggagacggtggaggacgagaattacgag
tatgggaaggcggatttctcagagcatgcgtgccggtattgtggggtgcagaatccggca
tgtgtcgtgaggtgcaacatcccgtcgtgccggaaatggttctgcaactcgaggggaaat
acatcgggatcccacatcgtcaatcacctggttcgagcaaaacacaaggaagtttgtctc
cacaaagacagcccgttaggagaaacaattcttgaatgctataactgtggctgccgcaat
gttttccttcttggctttatctctgcgaaaacagagagtgttgtagtgctcttgtgcaga
gagccttgtttgagtgtcaatgcattgaaagacatgaattgggatctcagccaatggtgt
ccactcattgacgatcggtgtttccttccatggcttgtcaaggtcccttctgagcaggaa
cagctgagagcacggcatatcagtgctcagcaaattaacaaagtggaagagctgtggaag
acaaaccctgatgctgctctagaagatcttgagaagcctggagtagatgatgagcctcag
cctgtagctttgaagtatgaagacgcttatcagtatcaaaatgtctttgcaccactcatc
aagcttgaagctgattatgataagacgatgaaagagtcacagagtaaagataacgtgaca
gtacgatgggatattggccttaacaagaaacgcgttgcttacttcgtcttccccaaggaa
gacaatgaactaaggcttgtcccgggagatgagttgcgtttgcgttattcaggagatgca
gctcatcctgcatggcagtctgtgggacatgtgatcaagctaactgctcaggaggaggtt
gcacttgaacttcgtgctaatcagggagttcctgttgatgtgaaccacggatttagtgta
gattttgtttggaagagtaccagctttgatcgaatgcaaggagcaatgaaaacttttgcc
gtggatgaaactagtgccagtgggtacatataccatcaccttttaggtcatgaagttgaa
cttcaaatagttcgtaacacgctaccccgccgctttggtgcccctggcttaccagaacta
aatgcatcccaagtttttgctgtgaaaagcgtccttcagaaaccaattagtttgatacaa
ggcccccctggcacagggaaaaccgtcacatctgctgcaattgtataccacatggctaaa
caaggacaagggcaggtcctggtatgtgctccaagtaatgtggctgttgaccaactggct
gagaagataagttcaacaggattgaaggtggttaggctttgtgccaaatcaagagaagct
gttatgtctcctgttgagcatctgacacttcactatcaggttcgacatcttgatacatct
gaaaagagtgaacttcataagctccaactgctaaaggatgaacaaggtgaattgtcgagc
agtgatgagaaaaagtttaaggcattgaaaagggccactgagagggagatattacagaat
gctgatgtcatttgttgcacctgcgttggtgctggagatcctcgactggcaaatttccga
ttccgccaggttcttattgatgagtctacccaagcaacagaacctgagtgtcttattccc
ttagttctcggggtcaaacaggttgttcttgtcggagatcattgtcagcttggtccggtg
ataatgtgtaaaaaggcagctcgtgctgggttagcgcagtctctttttgagcgccttgta
cttcttggacttaaaccattcagactgcaggtccaatatcggatgcatccttccctctca
gaatttccttctaatagcttctatgagggcacccttcaaaatggagtgacaataaatgaa
aggcaatcatctggcattgattttccttggccggtccccaatcgtcctatgttcttttat
gtccagatgggacaagaggagataagtgcaagtggaacatcttacctaaatagaaccgag
gctgcaaatgttgaaaaaattgttacaacatttttgagaagtggtgtcattcctagtcag
atcggtgttataacgccatatgaagggcaaagggcgtatatcgttaattacatgtcaagg
aatggtgctcttaggcaacagctctataaggaaattgaggttgccagtgtggactccttc
cagggtagagaaaaagattacattattttatcttgcgtacggagcaatgaacatcagggt
attggatttcttaatgatcctcgcagattgaatgttgcactaactcgagctcgttatggc
attgttattttggggaatccgaaagtccttagcaaacaaccattatggaatagcttattg
acacattacaaggagcatgaatgcctcgtagaagggcctctgaacaacttgaagcaaagt
atgatacaatttcaaaagcccaaaaagatttacagtgaccgtagacttttccttgggggt
ggtccagggatcatgcattctgataactttgggtccatcagttcttcaggccctaatgct
gacaggaggggtggacgcggtaaaggtcactcttatatgccatttggtccgcaaaatggt
actcataagcctggtgtgcacccagcgggatatcctctatctcgaatccctgttccacct
ttccctggaggcccccactctcagccatatgcaattccaactcgtggagctattcatgga
cctatcggagctgtttcacaggtcccgcaacctgggaataggggttttgggaccggtcgt
ggtcatgctggtggccctattggtggccaccttgcacatcagcaaacctcccaacaagct
ttgggtggtatcggttctgcttttaatttccctgccttggacaatccaaacagtcagcct
tctgctgggggtccattatcccagacaggactaatgacacaggtaccggttcaaggtctc
agtcaaacttttcgtgaaggattttctatgggtggcatgtctcaggattttttggcggat
gactttaaaagtcaaggatcacatgttgcatataatgttacggatttctctacacaggct
tctcagagtggttatggtgttgattatgttgctcaaggacaggctggattcccagggagt
tacttgaaccagaattcacagccaggatattcccatttgggcaccggaaatgatttcata
tcgcaggactacatgcctcatgggtcgcaaggtcttttaacccaagcaggaatcaatgac
ccttcacaggatgagtcgtctcagagccattttagcatgactggacctggtcctcttcaa
tcgcagggcctgatgaatcctctctattctcaacccttcgctcattacaacactcagcct
caaaatttgcaacctccacatccgcaaagtcagagctcgcccaaccagaaacttcattac
aatggctga
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integrated database retrieval system
