Phoenix dactylifera (date palm): 103704345
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Entry
103704345 CDS
T03274
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
103704345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pda03400
]
103704345
DNA repair and recombination proteins [BR:
pda03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
103704345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
ATG17_like
Motif
Other DBs
NCBI-GeneID:
103704345
NCBI-ProteinID:
XP_008785817
UniProt:
A0A8B7BUP5
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Position
8:complement(14539772..14555776)
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AA seq
942 aa
AA seq
DB search
MGEDYSPEPNKLPELKLDARQAQGFISFFKTLPRDPRAVRFFDRRDYYTVHGDNAAFIAR
TYYHTTTALRQLGSGPDGISSVSVSKTMFETIARDLLLERTDHTLELYEGSGSNWRLTKT
GTPGNIGSFEDVLFANNDMQDTPVTISLFPIFRENQYTVGLSFVDITKQKLGLAEFLDDS
QFTNVEAVMVALGCKECLLPMECGKSVELKALHGVLTKCNVLLTERKKSEFKSRDLVQDL
GRIIRGSIEPVRDLLSDFEFALCALGALISYAELLADDGNYGRYTIEKYNLDSYMRLDSA
AMRALNVLENKTDLNKNFSLFGLMNRTCTAGMGKRLLNRWLKQPLLDVGEISCRLDLVQA
FVEDAELRQGLRLHLKRISDIERLTHNVKKKTANLQPVIKLYQSSIRLPHIKDVLERYEG
KFSPLIRKKYLEPLEYWMDEHRLNKFTALVEVAIDLDQLENGEYMISPKYNPNLAALKEQ
LNAAERQIHSLHKQTANELDLSLDKTLKLEKGTQFGHVFRITKKEEQKVRKKLSTHYIVL
ETRKDGVKFTNSKLKKLGDQYQKVLSEYTSCQKVIVAQVVDATASFSEVFETLSVILSEL
DVLLSFADLATSCPIPYVRPDLTPSDKGDIVLEGSRHPCVEAQDGVNFIPNDCTLERGKS
WFQIITGPNMGGKSTFIRQVGVNILMAQVGCFVPCDRASVSVCDCIFARVGAGDCQLRGV
STFMQEMLETASILKGASEKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVTRAPTLFAT
HFHELTALAHVDGHEPHSSPNLGVANYHVGAHIDPPSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVTLARSKAEELENFSETFGFNNDLKEEVGSKRKQACSPDDIAKGAARAHQF
LQGFSALPLDQMDLEQAVEQVKKLRSELEKDAASYPWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggagaagattattcaccggaacccaacaagcttcccgagctcaaattagatgcccgc
caagcccaggggtttatttccttcttcaaaaccctcccccgtgatccgcgggctgtgcgc
ttcttcgatcgccgagattattatactgttcatggtgataatgctgctttcattgcaagg
acatattaccacactactactgctttgagacaactgggtagtggtcctgatggtatttcc
agtgttagtgtaagtaaaaccatgtttgaaactattgctcgtgaccttttactggagaga
acagatcataccctggagctttatgagggaagtggatcaaactggaggctgacaaaaact
ggaacacctggtaacattggtagttttgaagatgttttgtttgccaacaatgacatgcag
gatactccagttaccatttcattgtttcctatcttccgcgaaaaccagtacactgtggga
ctaagttttgtcgatataaccaagcaaaaacttggtttggcagagttccttgatgatagc
cagttcacaaatgttgaagcagttatggtcgctcttggttgcaaggagtgtcttctaccc
atggaatgtgggaaatcagtggaattgaaagctcttcatggtgtactgactaaatgtaat
gtccttttaactgagagaaagaaatctgagttcaagtcaagagatctggtacaggacctt
ggtaggatcatcagaggttctattgaacctgttcgggatttactttctgactttgaattt
gctttgtgtgctctaggggctttaatatcatatgccgagttacttgcagatgatggcaat
tatgggcgttataccattgaaaagtacaatctagatagttacatgagattagattctgct
gccatgagagcattgaatgttctagagaacaaaacagatttaaacaaaaattttagtttg
tttggtctaatgaatagaacctgcactgccggcatgggtaaacggttgctaaacaggtgg
ctcaaacaacctctcttagatgtgggtgaaattagttgtagactggatctggttcaggca
tttgtggaggatgcagaacttcgccaaggactgaggttacatttaaaaagaatttcagat
attgagagattgacacataatgtgaagaagaagacagctaacttgcagccagtcataaaa
ctctatcagtcaagcattagacttccacacatcaaagatgttcttgagcgttatgaaggg
aaattttcaccactgataagaaagaaatatctggaaccattagaatattggatggatgag
catcgactaaataagtttaccgctctagttgaagttgctattgaccttgatcaacttgag
aatggtgagtatatgatatcgccgaaatataatccaaacttagctgcactgaaggaacaa
ctaaatgcagcagagcggcaaattcacagtttgcacaaacaaacagcaaatgaacttgat
ctttctcttgataagacattgaagttggaaaaagggacacagtttggacatgtttttagg
atcacgaagaaagaggagcaaaaagtgaggaaaaagctaagtacccattatattgttctg
gaaactcggaaggatggagtaaaattcacaaactccaaacttaaaaagttaggagatcaa
taccaaaaggtactcagtgaatatacaagttgtcagaaagtgattgttgctcaagtagtt
gatgctacagcttcattttctgaggtatttgaaacactttccgtgattctttctgagctt
gatgttttactaagttttgctgacttggcaaccagttgtccaattccatacgtaagacca
gaccttacaccctcggataaaggagatattgtactagaagggagtcggcatccatgtgtg
gaggctcaggatggtgtgaattttatacctaatgattgtactcttgaacgtggaaagagt
tggttccagatcattaccggacctaacatgggtggtaaatccacatttatacgacaggtt
ggcgtaaacatattaatggcgcaagttggctgctttgttccatgcgatagagcaagtgtt
agcgtatgcgattgcatttttgctcgtgttggggctggtgattgccaacttcgtggagtt
tccacctttatgcaggaaatgcttgaaactgcatccatcttgaaaggtgcctctgagaag
tcgctgataattattgatgagttgggccgtggcacttctacttatgatggatttggtttg
gcttgggctatttgcgagcaccttgtgcaggtgaccagagcaccaactttatttgcaact
cactttcatgagctgactgcattagctcatgttgatggtcatgagccccatagttcgccc
aatcttggagtggcaaattatcatgttggagcacatatagatccaccaagtcgtaaatta
acaatgctttataaggttgaacccggtgcctgtgatcaaagttttggtattcacgtggca
gagtttgcaaactttcctgaagctgttgttactcttgctagaagtaaagctgaggagttg
gaaaatttttctgagacatttggctttaacaatgatctgaaagaagaggtaggatccaag
cgcaagcaagcatgtagtcctgatgacattgctaaaggtgcagctcgggctcatcaattc
ttgcaggggttttctgctttgccgctagaccagatggacttggaacaggccgtggaacaa
gttaaaaaactgaggtctgagctggagaaagatgcagccagctatccttggctccagcaa
tttttctga
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