Phoenix dactylifera (date palm): 103704631
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Entry
103704631 CDS
T03274
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103704631
03015 mRNA surveillance pathway
103704631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103704631
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
103704631
5.6.2.5 RNA 5'-3' helicase
103704631
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103704631
mRNA cycle factors
Common to processing body (P body) and stress granule
103704631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
NPHP3_N
nSTAND3
UvrD-helicase
Helicase_RecD
ATPase
PhoH
SRP54
AAA_16
AAA_22
Hydin_ADK
AAA_32
TraI_hel_assoc_N
AAA_25
AAA
Ribosomal_S13_N
Motif
Other DBs
NCBI-GeneID:
103704631
NCBI-ProteinID:
XP_008786216
UniProt:
A0A8B7BVF3
LinkDB
All DBs
Position
5:complement(3075521..3098934)
Genome browser
AA seq
1266 aa
AA seq
DB search
MAADSVVNNLYETASQPDTGGDAYTFLEFNTQGDEYDYPEFRELSQPTRSSAWPSPATPD
AVPDPPASDLPAPDAGAGSSASPSASASSSKGRGGAGNQVAAVDPLAAGMSGLSFEETGE
DDNYEYGKGDFMEHACRYCGVQNPACVVRCNIPSCRKWFCNSRGNTSGSHIVNHLVRAKH
KEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWD
LSQWCPLIDDRCFLPWLVKVPSEQEQLRARQISAQQINKVEELWKTNPEATLEDLEKPGV
DDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRVAYF
VFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDLN
HGFSVDFVWKRTSFDRMQAAMKTFAVDETSVSGYIYHHLLGHEVEHQTVRNTLPRRFGAP
GLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVA
VDQLADKISSTGLKVVRLCAKSREAVMSPVEHLTLHYQVRHLDTSEKSELHMLQQLKDEQ
GELSSSDEKKFKALKRATEREILQNADVICCTCVGAGDPRLANFRFRQVLIDESTQATEP
ECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGLKPFRLQVQYRM
HPSLSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSY
LNRTEAANVEKIVTTFLRSGVIPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVA
SVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPL
WNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYSDRRLFFGGGPGIVHADNFASPSS
SSPNADKRSGRGKGHSYMPFGPPNGTHKPGVHPAGYPLPRIPVPPFPGGPHSQPYAIPTR
GAVHGPIGAVPQVPQPGNRGFGAGRGNAGGPIGGHLAHQQTSQQALGGIGSAFNFPALDN
PNSQPSVGGPLSQPGLMTQVPVQGLSQTFREGFSIGGMSQDYLGDDFKSQGSHVAYNVAD
FSTQASQGGYGVDYVAQGQAGFPGSYLNQNSQPGYPHLGTGNDFMTQDYMPHGSQGLFTQ
AGFNDPSQDESSQSHFSMAGPALQSQGLMSSLYSQPFTHYNTQPQNLQPPQPQSQSSPNP
KLHYNG
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgactcggtcgtcaataacctctacgagacggcgtcgcagcccgacacgggc
ggcgacgcctataccttcctcgagttcaacacccagggggacgagtacgactaccccgag
ttccgggagctctcccagccgacccgatcctcggcttggccctctccggcgacgccggac
gccgtgccggacccccccgcctccgatcttccggcccccgacgccggcgcgggatcgtcg
gcttccccctcggcgtcagcctcgtcctccaagggcaggggcggggccggtaatcaggtg
gcggccgtcgaccccctcgcggcgggtatgagcgggctcagcttcgaggagacaggggag
gacgacaattacgagtatgggaagggggatttcatggagcatgcgtgccggtattgtggg
gtgcagaacccagcatgtgtcgtaaggtgcaacatcccgtcatgccggaaatggttctgc
aactcgaggggaaatacgtcgggatcccacatcgtcaatcacttggttcgagcaaaacac
aaagaagtttgtctccacaaagacagcccattaggagaaacaatccttgaatgctataac
tgtggttgccgcaatgtttttcttcttggctttatctctgcaaaaacagagagtgttgtt
gttctcttgtgcagagagccatgtttgagtgtcaatgcattgaaagacatgaattgggat
ctcagccaatggtgtccacttattgatgatcgatgtttccttccttggcttgtcaaggtc
ccttctgaacaggaacagctgagagcgcggcaaattagtgctcagcaaattaacaaagtg
gaagagctgtggaagacaaaccctgaggctactttagaagatcttgagaagcctggagta
gatgatgagcctcagcctgtagccttgaagtatgaagatgcttatcagtatcaaaatgtc
tttgcaccgctcatcaagcttgaagctgattatgataagatgatgaaagagtcacagagt
aaagataacgtgacagtacgatgggatatcggtcttaacaagaagcgtgttgcttatttt
gtctttcccaaggaagataatgaactaaggcttgttccgggagatgagttgcggttgcgt
tattcaggagatgcagctcatccagcatggcagtccgtgggacatgtgatcaagctaact
gcccaggaggaggttgcacttgaacttcgtgctagtcagggagttcctgttgacttgaac
cacggctttagtgtagattttgtttggaagagaacaagctttgaccggatgcaagctgca
atgaaaacttttgctgtggatgaaaccagtgtcagtgggtatatataccatcacctttta
ggtcatgaagttgaacatcaaacagttcgtaacacactacctcgccgctttggtgctcct
ggccttccggaactaaatgcatcccaagtttttgctgtgaaaagtgttcttcagaaacca
atcagtttgatacagggcccccctggcacaggaaaaactgtcacatctgcagcaattgta
taccacatggctaaacaaggacaagggcaggtcctggtatgtgctccaagtaatgtggct
gttgatcaactggctgacaagataagctcaactggattgaaggttgttaggctttgtgcg
aaatcaagagaagcagttatgtctccagtggagcatctaacacttcattaccaggttcga
catcttgatacatctgaaaagagtgaacttcatatgctccaacagctgaaggatgaacaa
ggtgaattatcaagcagtgatgaaaaaaagtttaaggcattgaaaagggccacagaaagg
gagatattacagaatgctgatgtcatttgttgcacctgtgttggtgctggagatcctcga
ctggcaaacttccgattccgccaggttcttatcgatgagtctacccaagcaacagaacct
gagtgtcttattcctttagttcttggggtcaaacaggttgttcttgttggagatcattgc
cagcttggtccagtaataatgtgtaaaaaggcagctcgtgctgggttagcccagtctctt
tttgagcgccttgtccttcttggtcttaaaccattcagactgcaggtccaatatcggatg
catccttctctctcagaatttccttctaatagcttctatgagggcacccttcaaaatgga
gtgacaataaatgaaaggcaatcatctggcattgattttccttggccggttcctaatcgt
cctatgttcttttatgtccagatggggcaagaggagataagtgcaagtggaacatcttac
ctaaatagaactgaggctgcaaatgttgaaaaaattgttactacatttttgagaagtgga
gtcatacctagtcagattggtgttataacgccctatgaaggacaaagggcatatattgtt
aattacatgtcaaggaatggtgctcttaggcaacagctttataaggaaattgaggttgcc
agtgttgactccttccagggtagagaaaaagattacattattttgtcttgcgtaaggagc
aacgaacatcagggtattggatttcttaatgatccacgtagattgaatgttgcactaact
cgagctcgttatggcattgttattttggggaatccgaaagtccttagcaaacaaccatta
tggaatagcttattgacacattacaaggagcatgagtgcctcgtagaagggccactgaat
aacttgaagcaaagtatgatacaatttcaaaagcccaaaaagatttacagtgaccgcaga
cttttctttgggggtggtccagggattgtgcatgctgataactttgcgtcccctagttct
tcgagccctaatgctgataagagaagcgggcgcggtaaaggtcactcttatatgccattt
ggtcctccaaatggtacacataagcctggtgtgcacccagcaggatatcccctacctcga
atccctgttccacctttccctggaggtccccattctcaaccttatgcaattccgactcgt
ggagctgttcatggacctattggagctgttccacaggtccctcaacctgggaataggggt
tttggggctggtcgtggtaatgctggtggtcctattggtggccaccttgcacatcagcaa
acctcccaacaagctttgggtggtattggttctgcttttaatttccctgccttggacaat
ccaaacagtcagccttctgttgggggtccattgtcccaacctggactgatgacacaggta
ccagttcaaggtcttagtcaaactttccgtgaaggtttttctataggtggcatgtctcag
gattatttgggggatgactttaaaagccaaggatcacatgttgcatataatgttgcagat
ttctcaacacaggcttctcagggtggttatggtgttgattatgttgctcaaggacaggct
ggattcccagggagttacctgaaccagaattcacagccaggatatccccatttgggcact
ggaaacgatttcatgactcaggactacatgcctcatggatcccaaggtcttttcacccaa
gcaggattcaatgacccttcacaagatgagtcatctcagagccattttagcatggctgga
cctgctcttcagtcacagggcctgatgagttctctctactcccaaccctttactcattac
aacactcagcctcaaaatttgcagcctccacagccgcaaagtcagagctcacccaaccca
aaacttcactacaatggctga
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integrated database retrieval system
