Phoenix dactylifera (date palm): 103704946
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Entry
103704946 CDS
T03274
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03013
Nucleocytoplasmic transport
pda03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
103704946
03015 mRNA surveillance pathway
103704946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103704946
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
103704946
mRNA cycle factors
P-body specific factors
103704946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
103704946
NCBI-ProteinID:
XP_008786701
UniProt:
A0A8B7BW96
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Position
10:complement(6747292..6781105)
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AA seq
1204 aa
AA seq
DB search
MVPPTKGEMEHPEDECRMVGEHHDKQDDEESAARLDECKKSIDVKLALRHSNLNPERPDS
GFLRMLDSSIKRNTTVIKKLKQINDEQREGLMDELRSVNLSKFVSEAAAAICDAKLRTSD
IQAAVQVCSLLHQRYKDFSPCFIQGLLKVFFPGKCGDDLDADKNMRAIKKRSTLKLLMEL
YFVGVVVDVGIFVNIIKDLTSLEHLKDQDVTQTNLSLLTSFARQGRYFIGLHQPGQEVHD
EFFKDLNVTADQKKIFKKAFHSYYDAVAELLQSEHHSLQMMELENAKILSAKGELSDENA
ASYEKLRKSHDHLFRGVSSLAEALDMQPPVMPDDGHTTRVTTGVEVSSSASGKESSLLEP
VWDDEDTRAFYESLPDLRAFVPAVLLGEAEPKLNEQHPKTPEQQSESAPEPDMEAQDIAE
ACADSEPLPEGKAEEKGKDKEDKDKEKMKESAKEKSKEKDTERKGEGEKDKVKGLDGTSL
DGLFQRLPSCVSRDLIDQLTVEFCYLNSKANRKKLVRSLFNVPRTSLELLPYYSRMVATL
STCMKDVPTMLLSMLEDEFNFLINKKDQTNIETKIKNIRFIGELCKFKIAPAGLVFSCLK
ACLDDFTHHNIDVACNLLETCGRFLYRTPETTIRMANMLDILMRLKNVKNLDPRHSTLAE
NAYYLCRPPERSARVSKVRPPLYQYIRKLLFSDLNKSTVEHVVRQLRKLPWAECESYILK
CFLKVHRGKYSQVNLIALLTAGLSHYHGEFAVAVVDEVLEEIRLGLELNDYGMQQRRLAH
MRFLGDLYNYEHIDSSVIFETLYLIIIFGHGTPEQDALDPPEDCFRIRMIITLLQTCGHY
FDRGSSKRKLDRFLMYFQRYVLSKGPIPLDIEFDIQDMFAELRPNMTRYSSIEEVNAALI
ELEEHERMASIEKASSEKHSDSESQKTLSQTATTITANGSILANGKKENGRKHEEPPDSE
SYSDGGSIDPEGHEDEEELLYEDRSDDRSEGDGDDEDDGGPMGSDEEDSIQVRQKLVEVD
PEEEEDFDRELRALMQESLESRKLELRARPTLNMKIPMNVFEGSKDTRTIEGESVEETMD
EEGGSGAGHKVRVKVLLKRGSKQQTKQMDIPQDCSLVQSTKQKEAAELEEKQSIKRRILE
YNEREEEESNGISSQTGTWMQTGSSVGSSRLVGRGNWDGAGRTGGARQRLHSSGGFYHGH
GRRR
NT seq
3615 nt
NT seq
+upstream
nt +downstream
nt
atggttcctcctactaaaggagaaatggaacatccagaagatgagtgtcggatggttggt
gaacatcatgataaacaggatgatgaggaaagtgctgcacgtcttgatgaatgtaagaaa
tcaattgatgtgaaacttgctctccgtcatagcaatctgaatcctgaaaggccagactca
ggttttctcaggatgttggactccagtattaaacgcaatacaacggttattaaaaagctt
aaacagataaatgatgagcaacgagaagggttgatggatgaattaagaagtgtcaactta
agcaaatttgtcagtgaagctgcggcagctatttgtgatgccaagcttagaacttcagat
atacaagctgctgtgcaggtctgctcgttgcttcatcagagatacaaagacttctcccct
tgctttattcagggcctcttgaaagttttctttcctggaaaatgtggtgatgatttggat
gcagataaaaacatgagggcaataaagaaaaggagcactctgaaacttcttatggaactt
tattttgttggagttgtggtggatgtcggcatttttgtaaatattataaaggatcttacc
agcttggaacatttaaaggatcaggatgtaactcagaccaatttgtcccttctcaccagt
tttgctcgacaaggcaggtacttcatagggctccatcagcctggacaagaagttcatgat
gagttctttaaggaccttaatgtcactgcagatcaaaaaaaaatcttcaagaaagcattt
cactcatattatgatgctgtagctgaactacttcaatctgagcaccattctcttcaaatg
atggaactcgagaatgcaaagatcttaagcgctaaaggggagctcagtgatgagaatgca
gcttcttatgagaaacttcggaagtctcatgatcacctatttcgtggtgtctcctctttg
gctgaggcccttgatatgcaacctccagtaatgccagatgatggacacacgactagggta
accaccggtgttgaagtatcatcttcagcttctggcaaggagtcttctttgcttgaacct
gtatgggatgatgaagatacaagggcattttatgaatccttgcctgatctgagagctttt
gttcctgctgtattattgggagaagctgagcccaagttaaatgagcaacatccgaagaca
ccagaacaacaaagtgaatctgccccggagcccgacatggaagcccaagatattgctgag
gcctgtgcagactcggaacctttaccagagggaaaagcagaggaaaaaggtaaagataaa
gaggacaaagataaggaaaagatgaaagaatctgcaaaagaaaaatcgaaagagaaagac
actgaaaggaaaggagaaggtgaaaaggataaagttaaaggccttgatggtacaagctta
gatggtctgtttcagaggcttccaagttgtgtgagccgtgaccttattgatcagttgacg
gtcgaattttgctacttgaattcgaaggcaaatcgaaagaaacttgttaggagtttgttc
aatgtcccgaggacttccttagaattactaccatactattctcgaatggtagcaacattg
tcgacatgtatgaaagatgttccaactatgcttttgtcaatgttggaagacgagttcaac
tttttgataaataaaaaggatcagacaaacatagagaccaagataaagaacatcagattt
attggagagctgtgcaaatttaaaattgcacctgcaggacttgtttttagttgcttgaag
gcttgtttagatgacttcactcatcataacatagatgttgcttgcaatcttcttgagaca
tgtggccgttttctgtatcgaactccagaaactacaatacgcatggctaacatgttggac
atactgatgcgtttaaagaatgtcaaaaatttggatccacgtcatagtacacttgcagaa
aatgcttattacttgtgcagaccacctgaacgatctgctagagtttctaaagtacgccct
ccattatatcagtatatcaggaaattgcttttttcagacctcaataagtccactgttgaa
cacgttgttagacagttgcgcaagttaccttgggcagaatgcgaatcatatatcttgaag
tgctttctgaaggtccacagggggaagtacagtcaagttaatctgattgctttactcact
gcaggcctcagtcattaccatggtgaatttgcagtagcagtagtggatgaggttttggag
gagattaggctagggttggaattgaatgattatgggatgcagcagcggcgccttgctcac
atgcgattcttaggagacctatacaactatgagcatattgattcatctgtaatttttgaa
acattatacctgattatcattttcggacatggaacaccagaacaagatgcactggatcca
ccagaagattgcttccgtatcaggatgataataacacttcttcagacatgtggtcattat
tttgatcgaggttcttcaaagaggaagcttgatagatttttgatgtattttcagagatac
gtgcttagcaaaggtccgataccactagatattgagtttgacattcaggatatgtttgcc
gagttacgaccaaacatgactcgttactcatccattgaggaagttaatgctgcattgatc
gaacttgaagaacatgagcgcatggcctcaatagaaaaggccagcagtgagaagcactcg
gatagtgaatctcagaaaactctgtcccaaacagccactaccatcacagccaatggcagc
atcttagcaaacggaaagaaggaaaatggcaggaagcatgaagaaccaccagacagtgaa
agctattcagatggtggcagtattgatccggaaggacatgaagatgaggaagagctgttg
tatgaggacagatcagatgacagatctgaaggggatggtgatgatgaggatgatgggggg
cccatgggttctgatgaggaagacagtattcaggtcaggcagaagctggtggaagttgat
cctgaggaggaagaggactttgaccgagagctgagagccctcatgcaggagagtttggag
tcccgcaagttagagctacgggcaaggcccactctgaacatgaagataccaatgaatgta
tttgaggggtctaaagatacacggaccattgagggggagagcgtggaggagacaatggat
gaggagggtggcagcggtgcagggcacaaggtgagggtgaaggtgcttcttaagaggggg
agcaagcagcagacgaagcagatggatattcctcaggactgctcactcgtgcagagcaca
aagcagaaagaggctgcggagctggaggagaagcagagcattaagcggaggatcctggag
tacaatgagagggaagaggaggaatcaaatgggatctcatcccagactggaacttggatg
caaaccgggagcagtgttggtagcagtaggctggtgggtcgtggcaattgggatggtgca
ggaaggacaggaggagcacggcagcggctccattcatctggtgggttttatcatgggcat
ggtaggagaagatga
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integrated database retrieval system
