Phoenix dactylifera (date palm): 103705399
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Entry
103705399 CDS
T03274
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH6-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103705399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103705399
03012 Translation factors [BR:
pda03012
]
103705399
Enzymes [BR:
pda01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103705399
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103705399
Translation factors [BR:
pda03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
103705399
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
R3H
DEAD
HA2_N
Ank_2
AAA_22
ATPase
nSTAND3
Ank_5
AAA_19
AAA_23
AAA_16
ABC_tran
AAA_25
AAA_7
Motif
Other DBs
NCBI-GeneID:
103705399
NCBI-ProteinID:
XP_026659792
UniProt:
A0A8B8J3C9
LinkDB
All DBs
Position
Unknown
AA seq
1235 aa
AA seq
DB search
MGRKGQKKGKGGEQQPGVVSEDTRIRIDKVLQEFRVSGAEVYTFEPGLSRHERAAIHEMC
RKMGMVSKSSGYGERRCLSVYKNRNKQGAVKNEEETVTCLKFSEETKNVLQDLFTCFPPG
DGELSEEALRNSSEKAGKRPWKQDTGFCKPSMHKFEIAKKVDLLASKINESAQLRKLMED
RAKLPIAYFKDVITSTLETDQVVLISGETGCGKTTQVPQYILDHMWGKDEACKIVCTQPR
RISAISVAERIAYERGETVGENVGYKIRLESKGGKNSSIMFCTNGVLLRLLVSRGANSSK
AETGNRSLEDSLMGITHIIVDEIHERDRFSDFMLAILRDLLPSYPHLRMVLMSATIDAER
FSKYFSGCPIIQVPGFTYPVKTFYLEDVLSVLKSTDDNHLNPVAISGVEEGTPLTEDYKN
ALDESINLALANEEFDPLLELISTEQTPKIYNYQHSLTGASPLMVFAGKGRVGDVCMLLS
FGADCSLCANDGSTALDWAQQENHLHVCEIIKKHMEKALSKSAEEEELLSKYLASINPVH
IDTILIERLLRKICTDSKEGAILVFLPGWDDINQTRERLLASPFFRDPSKFVILSLHSMI
PSAEQKKVFKCPPAGVRKIILSTNIAETAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQS
SWVSKASARQREGRAGRCQPGTCYHLYSRTRAASLPEYQVPEIKRMPIEELCLQVKLLDP
DYRIVNFLHRTLDPPVPETIRNAIIVLQDIGALTDDEKLTDLGEKLGSLPVHPSTSKMLL
FAILMNCLEPALTLACAADYREPFILPMAPDERKRAAVAKLELASLYGGYSDQLAVVAAF
DCWKRAKDRGQESQFCSKYFVSSNTMNMLSSMRKQLHSELAKNGFIPSDISSCSLNARDP
GILQAVLMAGTYPMVGRLLPRRKNGGKRAIVETASGAKVRLHPHSSNFNLSFSKSAGSPL
IIYDEITRGDGGMYIKNCSLVGPYPLLLLAMEIFVAPANDDVESDEDEESSSGEEDEMEM
NTLSEQHGEEIMSSPDNTVLVIADRWLRFESTALDVAQIYCLRERLSAAILFKVKYPQEV
LPPALGASMYTIACILSYDGLPSIVPVDESMEPQTSKADATDMKQGRRAIGYISPGKFLR
SLVSDKAQNKSNFHKMRASMHGSAILPYSAPHAPVERFQQQRPPLNGPGSGGSTPRIQPS
KRQRENVSRDMIYIFARFANRYGDFDHLMKERTKY
NT seq
3708 nt
NT seq
+upstream
nt +downstream
nt
atggggaggaagggacagaagaaggggaagggaggggagcagcagccgggcgtcgtctcc
gaggacacccgcattcgaatagacaaagtcctccaggagttccgagtctcgggtgccgaa
gtctacaccttcgaacctggtttgtcaagacatgaacgagctgcaattcatgaaatgtgc
agaaaaatgggcatggtatcaaaaagttctgggtatggagaacgcagatgcctttcggtt
tacaaaaacagaaacaaacagggagctgtcaagaatgaagaagaaactgttacttgcttg
aaattttcagaagaaacaaaaaatgttttacaggacctatttacatgttttcctcctggt
gatggagagctgagtgaagaagcactcaggaattctagtgaaaaggctggtaaacgacca
tggaagcaggatactggcttttgcaagccatcgatgcacaagtttgaaattgcaaagaag
gtggatctgctcgcatctaaaataaatgagtctgcacagctgagaaagctgatggaagac
agagctaaacttccaattgcatacttcaaggatgtcatcacatcaacattggaaactgat
caggtggtgctgatatctggtgagaccggttgcggtaaaactactcaggtccctcaatat
atcttggatcatatgtggggaaaagatgaggcttgtaaaattgtgtgcacacaacccagg
cgcatatcagccatttccgttgctgagaggattgcttatgaaagaggggaaactgttgga
gaaaatgttggatataagatacgcctggagtctaaaggcgggaaaaactcatcaataatg
ttctgcactaatggagttcttttgagattattggttagcagaggtgcaaattcatccaag
gcagaaacaggaaacaggtcattggaggatagtctcatgggaataacacacattattgtg
gatgaaattcatgaaagggacaggttttctgattttatgctggcaattctcagagacctc
ctgccttcttaccctcatctacgaatggtactcatgagtgctactattgatgctgaacga
ttttcgaagtacttcagtggatgccccattattcaggtcccggggttcacatatcctgtc
aaaactttctatttggaggatgtgctttctgtcttaaaatctacagatgataatcatctg
aatcctgtggccataagtggtgtggaggaaggtactccattgacagaagactacaaaaat
gccctagatgaatcaatcaatctagctttagcaaatgaagaatttgacccactgttagaa
ctgatttctaccgagcaaacaccaaaaatctacaactaccagcattcattgactggtgcg
tcaccattgatggtgtttgcggggaaaggtagagtaggagatgtatgcatgctcctgtca
tttggtgctgactgctctttatgtgccaatgatggaagcactgcactggattgggctcag
caagagaatcatctccatgtctgtgaaattattaaaaaacacatggagaaagctttatcg
aagtcagcagaggaggaggagctactgagcaaatacctagcaagcattaacccagtgcac
attgacactatactaatagagaggttattaagaaaaatatgtactgattccaaggaagga
gcaatcctagtttttcttccaggatgggatgacataaatcaaactagagagagattgctt
gcatctccattttttcgagatccatcaaagtttgtgatactctctctccattctatgatt
ccatctgcagagcagaagaaagttttcaaatgtccacctgctggagttcgtaaaatcatc
ctctcaactaacattgcagagactgctgttaccattgatgatgttgtatatgtcatagac
agtggtcggatgaaagagaaaagttatgatccttataacaatgtatctactctgcagtct
tcttgggtttcaaaagctagtgctaggcagcgtgagggacgtgctggtcgttgccagcca
ggaacttgttaccatctgtactcgagaacacgtgcagcatctctgccagagtaccaagtt
cctgaaataaagcggatgccaattgaggaactctgtttgcaggtcaagttgcttgatccc
gattatagaatagtaaattttttgcacagaactttggaccctccagttccagaaactatc
cgtaatgcaatcattgttcttcaagacattggtgccttaacggatgatgaaaagcttaca
gatcttggggaaaagcttggttcccttcctgttcatccatcaactagcaagatgctatta
tttgctatcttgatgaattgcctagaacctgcattaacactagcatgcgcagcagattat
agggagccctttattctgccaatggctccagatgagaggaagagagctgcggtggccaaa
cttgagctggcttccttgtatggtgggtatagtgatcagcttgcagtagttgcagcattt
gattgttggaagcgtgcaaaagatagaggtcaagaatctcagttctgctctaagtatttt
gtctcttcaaacaccatgaatatgttgtctagcatgcggaagcagcttcatagcgaactg
gcaaaaaatggttttattccttcggatatatccagttgtagtttaaatgctcgagatcca
ggtatcctgcaggctgtcctcatggctggtacttatccaatggtgggaagattgctcccc
cgtcgcaagaatggtggtaaaagagctattgtggagacagctagcggcgccaaagtacgc
ttgcatccacattcctccaacttcaacttatcgtttagtaaatctgctggtagcccactt
ataatttatgatgagattacccgcggagatggaggtatgtacataaaaaactgttctctg
gttgggccatatccattgttgttgcttgcaatggagatttttgttgctcctgcaaatgat
gatgttgaaagtgatgaagatgaagaatcttccagtggtgaggaagatgagatggagatg
aacacattatctgagcagcatggagaggagattatgtcttctcctgataacactgtatta
gtcattgctgaccgatggctaagatttgagtcaactgcactcgatgttgctcagatttac
tgcttacgagaacggctatctgctgctatcttattcaaagtcaaatatccacaggaagtt
ctgcctcctgctcttggagcatctatgtacaccattgcttgtattctttcatatgatgga
ttgccgagtatagtccctgtcgatgaatcgatggaaccccaaacatcaaaggcagatgct
actgacatgaagcagggaagaagagcaattggctatatttctcctggcaagttccttaga
tctttggtgtcagataaagcccaaaataaatctaatttccataagatgagggcatcaatg
catggtagtgccatcttgccatactctgcaccgcatgccccggttgaaaggttccaacaa
caaagacctcccttaaatggaccaggttcaggtggttccacaccaaggatccagccttcc
aaacggcagcgtgaaaatgtgtcccgtgacatgatctacatctttgcaaggtttgctaac
agatatggagactttgaccatctcatgaaggaaagaacaaagtactga
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integrated database retrieval system
