KEGG   Phoenix dactylifera (date palm): 103705447
Entry
103705447         CDS       T03274                                 
Name
(RefSeq) protein PAT1 homolog 1-like
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
pda  Phoenix dactylifera (date palm)
Pathway
pda03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pda00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103705447
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pda03019]
    103705447
Messenger RNA biogenesis [BR:pda03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103705447
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     103705447
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 103705447
NCBI-ProteinID: XP_038987859
UniProt: A0A8B9AWT4
LinkDB
Position
11:23963841..23983654
AA seq 817 aa
MRGLDGEGGVSENPNPDGDLRGGAADNARFDASQYAFFGKGVLEEVELGGLEDGVDDRDA
GFIGLDDEEYRFSSMGDRGEVEGLGCLSDVDDLTSTFAKLNRTISDPRSAGVIGDRGSFS
RESSSTADWGQEADFPNWIDQNILDAENYQEGKRWWSQPYPSSSRLSESKPLYRTSSYPQ
QQPQHSSEPILARKSSFTSYPPPGGRSQISPNLTRHASIPSLTAGLQMTTSNLSPFSGPQ
LHLGGLSHGLHYGGNMPQFASPGLSINSRLQNHWLNQASVFAGEHPNLLPNFLQQHLPQP
NGLMPSQLLSQQQQQRLQQIQPSLPQFSRLQSPFFNSHPPQIRNKLDAVLSMSDLRDQRS
KPSQRGKQNMRFSKQSSDASSQKADNGLPQFRSKYMSAEEIESILRMQHAATHSNDPYID
DYYHQACLAKKSAGSRLKHHLCPTFIRDLPSRARANNEPHAFLQVDALGKVPFSSIRRPR
PLLEVDPPSTSGDGIHEQKSSVKPLEQEPLLAARITIEDGLCLLLDVDDVDRMLQFSQPP
DGGFQLRRRRQVLLEGLAASLQLVDPLGPGKGGHSVGLAPKDDLVFLRLASLPKGRKLLS
RYLQLLIPGSELSRIVCMAIFRHLRFLFGGLPSDSSAAETTLNLAKTVSSCVHNMELSAL
SACLAAVVCSSEQPPLRPLGSSAGDGASIIIKSVLDRATELLTEPQAASNYSMSNRALWQ
ASFDAFFRLLTKYCLSKYDSIMQMLLMQAPNTSIIGSEAARAISREMPVELLRASLPHTN
EHQRKMLLDFAQRSMPITGFSAHGGGSGPVTSESVPG
NT seq 2454 nt   +upstreamnt  +downstreamnt
atgagggggctggatggggagggtggggtttccgaaaaccctaaccctgatggcgatctc
agaggtggtgccgcagataatgctcgctttgatgcctcacagtatgcattctttggcaag
ggggtcctggaggaagttgaattagggggtttagaagatggtgtcgatgatcgtgatgct
ggatttatcggtcttgatgatgaggaataccgttttagttctatgggagatagaggagag
gttgaaggtttggggtgtctatctgatgtagatgatcttacgagcacttttgcaaagttg
aacagaacaattagtgacccaaggagtgctggggttattggtgatagaggatctttttct
agagaaagttcttcaactgcagactggggacaggaggcggattttccaaactggattgat
cagaatattttagatgctgaaaattatcaggagggtaaacgatggtggtcacagccatat
ccttcatcatctcggctttcggaatctaaacccctgtacagaacatcctcatatcctcaa
cagcaaccacaacactccagtgaaccaattcttgcacgtaaatcatctttcacatcctac
cctccacctggtggacgatctcagatttcaccaaacctcacacgtcatgcaagcattcca
tctctaactgctgggcttcagatgacaacttcaaatctatctcctttttctggtcctcag
cttcatttgggaggactatcgcatgggttgcactatggtggaaacatgcctcagtttgcc
tctccaggcctctcaattaatagccggctgcagaatcactggttgaatcaagctagcgtt
tttgcaggggaacatccaaatctgctgcctaacttcctacagcaacatttgccacagcca
aatggcttaatgccttcacagctactttcgcagcagcaacagcagagactgcaacagatc
caaccatctctgccccaattttctcgcttgcagtctccgtttttcaactctcatcctcca
caaataaggaataagcttgatgcagttcttagtatgtctgacttgagagatcagagatcg
aaaccatcacaaaggggaaaacagaacatgcgattttctaaacaatcttctgatgccagc
agccagaaggccgataatgggctgccacagtttaggtccaagtatatgtcagctgaagag
atcgaaagcattttgagaatgcagcatgctgcaactcacagcaatgatccttatatagac
gattactaccaccaagcttgtcttgcaaaaaagtctgctggttcaaggctgaagcaccat
ttatgcccgacatttattagggatctgccatctcgggcacgagctaataatgagccacat
gcatttcttcaggttgatgcacttggaaaggttccattttcttccattcgtaggcctcgc
cctctccttgaagttgatccaccttcaacctcaggagatggcattcacgaacagaaatct
tcagtaaagccccttgaacaggagccattgctggcagctagaatcaccattgaagatggc
ctttgcctcctccttgatgtagatgatgttgaccggatgttacaatttagccaaccacca
gatggtggcttccaactgagacggaggcgacaggtcctcctggaaggcctcgcagcatct
cttcagcttgttgatccacttggcccaggtaaaggtggacattctgttgggcttgctccg
aaagatgatcttgtgtttcttcgcctagcatctctgccaaagggccggaagctcctgtca
cgttaccttcagcttcttattcctggaagtgagctctctcgaatagtctgcatggccatt
ttccggcacctacggtttttgtttggtggtttgccatcagattctagtgcagcagaaacg
acattgaatcttgccaagactgtttcttcatgtgtgcacaatatggagttaagtgcactc
agtgcttgccttgctgctgtggtttgctcatccgaacagccacctcttcgccctcttgga
agttcagctggtgatggagcatccataattataaaatctgttcttgacagagcaacagaa
cttttgacagaaccccaggctgcaagcaactacagcatgtccaaccgagctctttggcaa
gcgtcgtttgatgccttttttaggcttctcacaaagtactgtctgagtaaatatgacagt
ataatgcaaatgttgctcatgcaggcaccgaacacttcaattattgggtctgaagcagca
agggctataagcagagagatgcctgtggagctgctgcgtgcgagccttcctcatacaaat
gagcaccagcgcaagatgttgcttgattttgctcagagatccatgcccataactggtttt
agtgcccatggaggtggcagcggtcctgtaacctctgagtcagttcctggctaa

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