Phoenix dactylifera (date palm): 103705447
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Entry
103705447 CDS
T03274
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
pda
Phoenix dactylifera (date palm)
Pathway
pda03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pda00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103705447
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pda03019
]
103705447
Messenger RNA biogenesis [BR:
pda03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103705447
mRNA degradation factors
5'-3' decay
Decapping complex
103705447
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103705447
NCBI-ProteinID:
XP_038987859
UniProt:
A0A8B9AWT4
LinkDB
All DBs
Position
11:23963841..23983654
Genome browser
AA seq
817 aa
AA seq
DB search
MRGLDGEGGVSENPNPDGDLRGGAADNARFDASQYAFFGKGVLEEVELGGLEDGVDDRDA
GFIGLDDEEYRFSSMGDRGEVEGLGCLSDVDDLTSTFAKLNRTISDPRSAGVIGDRGSFS
RESSSTADWGQEADFPNWIDQNILDAENYQEGKRWWSQPYPSSSRLSESKPLYRTSSYPQ
QQPQHSSEPILARKSSFTSYPPPGGRSQISPNLTRHASIPSLTAGLQMTTSNLSPFSGPQ
LHLGGLSHGLHYGGNMPQFASPGLSINSRLQNHWLNQASVFAGEHPNLLPNFLQQHLPQP
NGLMPSQLLSQQQQQRLQQIQPSLPQFSRLQSPFFNSHPPQIRNKLDAVLSMSDLRDQRS
KPSQRGKQNMRFSKQSSDASSQKADNGLPQFRSKYMSAEEIESILRMQHAATHSNDPYID
DYYHQACLAKKSAGSRLKHHLCPTFIRDLPSRARANNEPHAFLQVDALGKVPFSSIRRPR
PLLEVDPPSTSGDGIHEQKSSVKPLEQEPLLAARITIEDGLCLLLDVDDVDRMLQFSQPP
DGGFQLRRRRQVLLEGLAASLQLVDPLGPGKGGHSVGLAPKDDLVFLRLASLPKGRKLLS
RYLQLLIPGSELSRIVCMAIFRHLRFLFGGLPSDSSAAETTLNLAKTVSSCVHNMELSAL
SACLAAVVCSSEQPPLRPLGSSAGDGASIIIKSVLDRATELLTEPQAASNYSMSNRALWQ
ASFDAFFRLLTKYCLSKYDSIMQMLLMQAPNTSIIGSEAARAISREMPVELLRASLPHTN
EHQRKMLLDFAQRSMPITGFSAHGGGSGPVTSESVPG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagggggctggatggggagggtggggtttccgaaaaccctaaccctgatggcgatctc
agaggtggtgccgcagataatgctcgctttgatgcctcacagtatgcattctttggcaag
ggggtcctggaggaagttgaattagggggtttagaagatggtgtcgatgatcgtgatgct
ggatttatcggtcttgatgatgaggaataccgttttagttctatgggagatagaggagag
gttgaaggtttggggtgtctatctgatgtagatgatcttacgagcacttttgcaaagttg
aacagaacaattagtgacccaaggagtgctggggttattggtgatagaggatctttttct
agagaaagttcttcaactgcagactggggacaggaggcggattttccaaactggattgat
cagaatattttagatgctgaaaattatcaggagggtaaacgatggtggtcacagccatat
ccttcatcatctcggctttcggaatctaaacccctgtacagaacatcctcatatcctcaa
cagcaaccacaacactccagtgaaccaattcttgcacgtaaatcatctttcacatcctac
cctccacctggtggacgatctcagatttcaccaaacctcacacgtcatgcaagcattcca
tctctaactgctgggcttcagatgacaacttcaaatctatctcctttttctggtcctcag
cttcatttgggaggactatcgcatgggttgcactatggtggaaacatgcctcagtttgcc
tctccaggcctctcaattaatagccggctgcagaatcactggttgaatcaagctagcgtt
tttgcaggggaacatccaaatctgctgcctaacttcctacagcaacatttgccacagcca
aatggcttaatgccttcacagctactttcgcagcagcaacagcagagactgcaacagatc
caaccatctctgccccaattttctcgcttgcagtctccgtttttcaactctcatcctcca
caaataaggaataagcttgatgcagttcttagtatgtctgacttgagagatcagagatcg
aaaccatcacaaaggggaaaacagaacatgcgattttctaaacaatcttctgatgccagc
agccagaaggccgataatgggctgccacagtttaggtccaagtatatgtcagctgaagag
atcgaaagcattttgagaatgcagcatgctgcaactcacagcaatgatccttatatagac
gattactaccaccaagcttgtcttgcaaaaaagtctgctggttcaaggctgaagcaccat
ttatgcccgacatttattagggatctgccatctcgggcacgagctaataatgagccacat
gcatttcttcaggttgatgcacttggaaaggttccattttcttccattcgtaggcctcgc
cctctccttgaagttgatccaccttcaacctcaggagatggcattcacgaacagaaatct
tcagtaaagccccttgaacaggagccattgctggcagctagaatcaccattgaagatggc
ctttgcctcctccttgatgtagatgatgttgaccggatgttacaatttagccaaccacca
gatggtggcttccaactgagacggaggcgacaggtcctcctggaaggcctcgcagcatct
cttcagcttgttgatccacttggcccaggtaaaggtggacattctgttgggcttgctccg
aaagatgatcttgtgtttcttcgcctagcatctctgccaaagggccggaagctcctgtca
cgttaccttcagcttcttattcctggaagtgagctctctcgaatagtctgcatggccatt
ttccggcacctacggtttttgtttggtggtttgccatcagattctagtgcagcagaaacg
acattgaatcttgccaagactgtttcttcatgtgtgcacaatatggagttaagtgcactc
agtgcttgccttgctgctgtggtttgctcatccgaacagccacctcttcgccctcttgga
agttcagctggtgatggagcatccataattataaaatctgttcttgacagagcaacagaa
cttttgacagaaccccaggctgcaagcaactacagcatgtccaaccgagctctttggcaa
gcgtcgtttgatgccttttttaggcttctcacaaagtactgtctgagtaaatatgacagt
ataatgcaaatgttgctcatgcaggcaccgaacacttcaattattgggtctgaagcagca
agggctataagcagagagatgcctgtggagctgctgcgtgcgagccttcctcatacaaat
gagcaccagcgcaagatgttgcttgattttgctcagagatccatgcccataactggtttt
agtgcccatggaggtggcagcggtcctgtaacctctgagtcagttcctggctaa
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